View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5889-3 (Length: 206)
Name: Solexa-NF5889-3
Description: NF5889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5889-3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 4e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 52712480 - 52712295
Alignment:
| Q |
15 |
cccacatgaaatcagcttaggttgtaatcccatgaacaaacctagactaaacatggccattccaagaccagcattagatagtattgagatggaaccgttt |
114 |
Q |
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| T |
52712480 |
cccacgtgaaatcagcttaggttgtaatcccatgaacaaacctagactaaacatggccattccaagaccagtattagatagtattgagatggaaccgttt |
52712381 |
T |
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| Q |
115 |
acaatcgagggcatttcaatgtgcaacctgcagtgattatttatttgaagtttaaaaaatctttaatattattattattcatgatccaacgt |
206 |
Q |
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| T |
52712380 |
acaatcgagggcatttcaatgtgcaacctgcagtg---atttatttgaagtttaaaaaatctttaa---tattattattcatgatccaacgt |
52712295 |
T |
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Target: chr4; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 52718021 - 52717929
Alignment:
| Q |
54 |
acctagactaaacatggccattccaagaccagcattagatagtattgagatggaaccgtttacaatcgagggcatttcaatgtgcaacctgca |
146 |
Q |
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| T |
52718021 |
acctagactgaacatggccattccaagaccagcatcagacagtattgagatggaaccttttacaatggatggcatttcaatgtgaaacctgca |
52717929 |
T |
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