View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5889-32 (Length: 122)
Name: Solexa-NF5889-32
Description: NF5889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5889-32 |
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Alignment Details
Target: chr4 (Bit Score: 54; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 20383362 - 20383305
Alignment:
| Q |
3 |
aggcaccaaggaaagtacctaaacgatctcgaaaccaacatccacaagcaacatgatt |
60 |
Q |
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| T |
20383362 |
aggcaccaagaaaagtacctaaacgatctcgaaaccaacatccacaagcaacatgatt |
20383305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 91
Target Start/End: Complemental strand, 20383374 - 20383340
Alignment:
| Q |
57 |
gattacaagcaaaggcaccaaggaaagtacctaaa |
91 |
Q |
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|||||||||||||||||||||| |||||||||||| |
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| T |
20383374 |
gattacaagcaaaggcaccaagaaaagtacctaaa |
20383340 |
T |
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