View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5889-4 (Length: 204)
Name: Solexa-NF5889-4
Description: NF5889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5889-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 46457941 - 46458144
Alignment:
| Q |
1 |
gaacatgcatgggctaaatctaacatcagttatccgttgagtgtgctcttcaagcgtagatttcaggctaaacaattttgtgcaccatagagaagcctgc |
100 |
Q |
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| T |
46457941 |
gaacatgcttgggctaaatctaacatcagttatccgttgagtgtgctcttcaagcgtagatttcaggttaaacaattttgtgcaccatagagaagcctgc |
46458040 |
T |
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| Q |
101 |
atctcatagcaggttaacaaattcaaattgataaacaaaaatttctgtaaacaaacactaaatataacaacattgctgaatagagatcatttcataatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46458041 |
atctcatagcaggttaacaaattcaaattgataaacaaaaatttctttaaacaaacactaaatataacaacattgctgaatagagatcatttcataatta |
46458140 |
T |
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| Q |
201 |
aaag |
204 |
Q |
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|||| |
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| T |
46458141 |
aaag |
46458144 |
T |
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