View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5889-43 (Length: 104)

Name: Solexa-NF5889-43
Description: NF5889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5889-43
Solexa-NF5889-43
[»] chr1 (3 HSPs)
chr1 (2-104)||(33053638-33053740)
chr1 (6-104)||(22580893-22580991)
chr1 (28-104)||(34059584-34059660)
[»] chr4 (3 HSPs)
chr4 (2-104)||(41501539-41501641)
chr4 (6-97)||(19140638-19140729)
chr4 (17-79)||(34294869-34294931)
[»] chr5 (1 HSPs)
chr5 (2-104)||(29635922-29636024)
[»] chr3 (1 HSPs)
chr3 (6-104)||(678388-678486)
[»] scaffold0049 (1 HSPs)
scaffold0049 (2-94)||(45600-45692)
[»] chr7 (1 HSPs)
chr7 (6-104)||(39052249-39052347)
[»] chr8 (1 HSPs)
chr8 (32-104)||(3694802-3694874)


Alignment Details
Target: chr1 (Bit Score: 91; Significance: 1e-44; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 1e-44
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 33053638 - 33053740
Alignment:
Q  2 aaatccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgc 101  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  33053638 aaatccaaatttcaaaaccttaaaccaaagatttttaattgattaccttggtggttggttcaatgtctttgaaggcttttgaatacccctttgtggttgc 33053737  T
Q  102 acg 104  Q
    |||    
T  33053738 acg 33053740  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 7e-40
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 22580991 - 22580893
Alignment:
Q  6 ccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgcacg 104  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  22580991 ccaaatttaaaaaccctaaaccaaagatttataattgattaccttggtggtagattcaatgtctttgaaggcttttgaatgtccctttgtggttgcacg 22580893  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 34059660 - 34059584
Alignment:
Q  28 aaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgcacg 104  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||    
T  34059660 aaagatttataattgattaccttggtggtagattcaatgtctttgaaggcttttgaatgtcactttgtggttgcacg 34059584  T

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Target: chr4 (Bit Score: 87; Significance: 3e-42; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 3e-42
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 41501539 - 41501641
Alignment:
Q  2 aaatccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgc 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||| ||||||    
T  41501539 aaatccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaagcttttgaatgtccctttgcggttgc 41501638  T
Q  102 acg 104  Q
    |||    
T  41501639 acg 41501641  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 19140729 - 19140638
Alignment:
Q  6 ccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtgg 97  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  19140729 ccaaatttaaaaaccctaaaccaaagatttataattgattaccttggtggtagattcaatgtctttgaaggcttttgaatgtccctttgtgg 19140638  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 4e-23
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 34294931 - 34294869
Alignment:
Q  17 aaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggctt 79  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  34294931 aaccctaaaccaaagattttgaattgattaccttagtggtagattcaatgtctttgaaggctt 34294869  T

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Target: chr5 (Bit Score: 83; Significance: 7e-40; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 7e-40
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 29636024 - 29635922
Alignment:
Q  2 aaatccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgc 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||  ||||||| ||||||    
T  29636024 aaatccaaatttcaaaaccctaaaccaaagatttttaattgattaccttgttggtagattcaatgtctttgaaagcttttgaatgtccctttgcggttgc 29635925  T
Q  102 acg 104  Q
    |||    
T  29635924 acg 29635922  T

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Target: chr3 (Bit Score: 83; Significance: 7e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 7e-40
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 678388 - 678486
Alignment:
Q  6 ccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgcacg 104  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  678388 ccaaatttaaaaaccctaaaccaaagatttataattgattaccttggtggtagattcaatgtctttgaaggcttttgaatgtccctttgtggttgcacg 678486  T

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Target: scaffold0049 (Bit Score: 77; Significance: 3e-36; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 77; E-Value: 3e-36
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 45692 - 45600
Alignment:
Q  2 aaatccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttg 94  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||    
T  45692 aaatccaaatttcaaaaccctaaaccaaatatttttaattgattaccttggtggtagattcaatgtctttgaaagcttttgaatgtccctttg 45600  T

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Target: chr7 (Bit Score: 75; Significance: 4e-35; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 4e-35
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 39052249 - 39052347
Alignment:
Q  6 ccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgcacg 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| || |||||  |||||||||||||||||    
T  39052249 ccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcagtgtctttaaaggtttctgaatgtccctttgtggttgcacg 39052347  T

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Target: chr8 (Bit Score: 53; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 6e-22
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 3694802 - 3694874
Alignment:
Q  32 atttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgcacg 104  Q
    |||||||||||||||||||||||||||||||| ||||||| |||| || ||||| ||||||||||||||||||    
T  3694802 atttttaattgattaccttggtggtagattcagtgtctttaaaggtttctgaatgcccctttgtggttgcacg 3694874  T

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