View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5889-46 (Length: 84)
Name: Solexa-NF5889-46
Description: NF5889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5889-46 |
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| [»] chr8 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 73; Significance: 5e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-34
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 31438933 - 31439013
Alignment:
| Q |
4 |
tattaaggttactgctattagtagaaatcaaaactgtgttgctcgtgagttagttcaaatgtccaaagtagttggctctaa |
84 |
Q |
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| T |
31438933 |
tattaaggttactgctattagtagaaatcaaaactttgttgctcatgagttagttcaaatgtccaaagtagttggctctaa |
31439013 |
T |
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Target: chr8; HSP #2
Raw Score: 58; E-Value: 5e-25
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 31197111 - 31197184
Alignment:
| Q |
11 |
gttactgctattagtagaaatcaaaactgtgttgctcgtgagttagttcaaatgtccaaagtagttggctctaa |
84 |
Q |
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| T |
31197111 |
gttactgctattagtagaaatcaaaactctgatgctcgagagttagttcaaatgtccacagtagttggctctaa |
31197184 |
T |
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Target: chr5 (Bit Score: 44; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 28767827 - 28767894
Alignment:
| Q |
12 |
ttactgctattagtagaaatcaaaactgtgttgctcgtgagttagttcaaatgtccaaagtagttggc |
79 |
Q |
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| T |
28767827 |
ttactactattagtagaaatcaaaactttgttgctgatgagttagttcaaatgcccaaaatagttggc |
28767894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 28768253 - 28768310
Alignment:
| Q |
19 |
tattagtagaaatcaaaactgtgttgctcgtgagttagttcaaatgtccaaagtagtt |
76 |
Q |
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| T |
28768253 |
tattagtagaaatcaaaactttgttgctcatgggttagttcaaatgtctaaaatagtt |
28768310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 29250041 - 29249997
Alignment:
| Q |
40 |
tgttgctcgtgagttagttcaaatgtccaaagtagttggctctaa |
84 |
Q |
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| T |
29250041 |
tgttgctcatgagttagttcaaatgtccaacatagttggctctaa |
29249997 |
T |
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