View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5889-7 (Length: 184)
Name: Solexa-NF5889-7
Description: NF5889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5889-7 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 27429039 - 27429207
Alignment:
| Q |
8 |
acacttaatcggttgcctaagtcacttcaaaatcgaaaagcatcagacatgtataaacgtatccgatactgatacatgtcagacacttccctatatgaaa |
107 |
Q |
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| T |
27429039 |
acacttaattggttgcctaagtcacttcaaaatcgaaaagcatcagacatgtataaacgtatccgatactgatacatgtcagacacttccctatatgaaa |
27429138 |
T |
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| Q |
108 |
agtatccaataatttattctcattctttctagaaatatttccactgaaacttctcgaatacattttcat |
176 |
Q |
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| T |
27429139 |
agtatccaataatttattctcattctttctagaaatatttccactgaaacttctcgaatacattttcat |
27429207 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 28792241 - 28792305
Alignment:
| Q |
105 |
aaaagtatccaataatttattctcattctttctagaaatatttccactgaaacttctcgaatacat |
170 |
Q |
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| T |
28792241 |
aaaagtatccaataatt-attttaattctatctaaaaatatttccaccgatacttctcaaatacat |
28792305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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