View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5889-8 (Length: 162)
Name: Solexa-NF5889-8
Description: NF5889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5889-8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 1e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 1e-76
Query Start/End: Original strand, 2 - 162
Target Start/End: Original strand, 52712030 - 52712190
Alignment:
| Q |
2 |
agagaaagagagtttgaaattgaggaagaaacaaagtctccatatattagccagaagaaggtggacttggaaggagttggggatgtaaacaaaaacaaac |
101 |
Q |
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| T |
52712030 |
agagaaagagactttgaaattgaggaagaaacaaagtctccatatattagccagaagaaggtggacttggaaggagttggggatgtaaacaaaaacaaac |
52712129 |
T |
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| Q |
102 |
agatgccaccagcaagtgtgatgacaaaactcatcctcgtcatggtcgggagaaaactcat |
162 |
Q |
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| T |
52712130 |
agatgccaccagcaagtgtgatgacaaaactcatcctcttcatggtttggagaaaactcat |
52712190 |
T |
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Target: chr4; HSP #2
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 2 - 162
Target Start/End: Original strand, 52717627 - 52717787
Alignment:
| Q |
2 |
agagaaagagagtttgaaattgaggaagaaacaaagtctccatatattagccagaagaaggtggacttggaaggagttggggatgtaaacaaaaacaaac |
101 |
Q |
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|||||||| || ||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||| | || |
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| T |
52717627 |
agagaaagggatgttgaaattgaggaagcagtaaagtctccatatattagccagaagaagatggacttggaaggaggaggggatgtaagcaaaaatacac |
52717726 |
T |
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| Q |
102 |
agatgccaccagcaagtgtgatgacaaaactcatcctcgtcatggtcgggagaaaactcat |
162 |
Q |
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| T |
52717727 |
agatgccaccagcaagtgtcatgacaagactaatcctcatcatggtttggagaaaactcat |
52717787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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