View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5889-9 (Length: 160)
Name: Solexa-NF5889-9
Description: NF5889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5889-9 |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 3e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 3e-74
Query Start/End: Original strand, 8 - 160
Target Start/End: Original strand, 1543483 - 1543635
Alignment:
| Q |
8 |
attattaggtggtacaataagcatatgtgaagtctttccatagcatataatatttcttgttgtaaaaggtacataacatgatgcttggtggacttgtttg |
107 |
Q |
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| T |
1543483 |
attattaggtggtacagtaagcatatgtgaagtctttccatagcatataatatttcttgttgtaaaaggtacataacatgatgcttggtggacttgtttg |
1543582 |
T |
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| Q |
108 |
tttccctctcaccaggtgagccctttataaatggccaagcagttccatatgat |
160 |
Q |
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| T |
1543583 |
tttccctctcgccaggggagccctttataaatggccaagcagttccatatgat |
1543635 |
T |
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Target: chr2 (Bit Score: 97; Significance: 5e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 5e-48
Query Start/End: Original strand, 32 - 160
Target Start/End: Original strand, 32425470 - 32425597
Alignment:
| Q |
32 |
atgtgaagtctttccatagcatataatatttcttgttgtaaaaggtacataacatgatgcttggtggacttgtttgtttccctctcaccaggtgagccct |
131 |
Q |
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| T |
32425470 |
atgtgaattctttccatagcatataatatttcttgttgtagaaggtacataacatgatgcttggtggacttctttgattccctctcacta-gtgagccct |
32425568 |
T |
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| Q |
132 |
ttataaatggccaagcagttccatatgat |
160 |
Q |
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| T |
32425569 |
ttataaatgggcaagcagttccatatgat |
32425597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 32421254 - 32421310
Alignment:
| Q |
104 |
tttgtttccctctcaccaggtgagccctttataaatggccaagcagttccatatgat |
160 |
Q |
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| T |
32421254 |
tttgtttccctctcaccaggtgagcccttcattaatgggcaagcagttccatatgat |
32421310 |
T |
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