View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk103-LTR4-TNT-insertion-1 (Length: 347)
Name: Tnk103-LTR4-TNT-insertion-1
Description: Tnk103-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk103-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 10 - 207
Target Start/End: Original strand, 32189730 - 32189927
Alignment:
| Q |
10 |
gagaatggagataaaatggaagctcttggaatgtgtcatttggatacatcattttggaacccaaatcataagttattcaagacactaggaatcaagcctt |
109 |
Q |
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| T |
32189730 |
gagaatggagataaaatggaagctcttggaatgtgtcatttggatacatctggttggaacccaaatcataagttattcaagacactaggaatcaagtctg |
32189829 |
T |
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| Q |
110 |
ggaagaattcttcagtgtgccacttctttcttgtaaaccatcttttgtggattccaaaatccaccatgtaaaggagttgatctatctagatctctatg |
207 |
Q |
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| T |
32189830 |
tgaagaactcttcggcgtgccacttctttcctgtaaaccatattttgtggattccaaaatccaccatgtgaaggagttgatctatctagatctctatg |
32189927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 235 - 337
Target Start/End: Original strand, 32189952 - 32190054
Alignment:
| Q |
235 |
gtgtgttagtttgttaatgtttgtgtgcatgagaaaaggttgtacaacacaatcgaaatacaaacctggacttgttgcaacctttaattactactccata |
334 |
Q |
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| T |
32189952 |
gtgtgttagtttgttaatgtttgtgtgcatgagaaaaggttgtacaacacaatcgaaatacaaacctagacttgttgcaacctttaattactactccata |
32190051 |
T |
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| Q |
335 |
tta |
337 |
Q |
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||| |
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| T |
32190052 |
tta |
32190054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 8e-49; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 10 - 164
Target Start/End: Original strand, 25648880 - 25649034
Alignment:
| Q |
10 |
gagaatggagataaaatggaagctcttggaatgtgtcatttggatacatcattttggaacccaaatcataagttattcaagacactaggaatcaagcctt |
109 |
Q |
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| T |
25648880 |
gagaatggagataaaatggaagctcttggaatgtgtcacttggatacatctgactggaaccctgatcatgagttattcaagacactaagaatcaagcctg |
25648979 |
T |
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| Q |
110 |
ggaagaattcttcagtgtgccacttctttcttgtaaaccatcttttgtggattcc |
164 |
Q |
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| T |
25648980 |
ggaagaattcttcagcgtgtcacttctttcctgtaaaccatcttttgtgggttcc |
25649034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 235 - 330
Target Start/End: Original strand, 25649215 - 25649309
Alignment:
| Q |
235 |
gtgtgttagtttgttaatgtttgtgtgcatgagaaaaggttgtacaacacaatcgaaatacaaacctggacttgttgcaacctttaattactactc |
330 |
Q |
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| T |
25649215 |
gtgtgttagtttgttaacgtctgtgtgcatgagaaa-ggttgtacaacacaatcaaaacacaaacttggacttgttgcaatctttaattgctactc |
25649309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 10 - 166
Target Start/End: Complemental strand, 26192102 - 26191946
Alignment:
| Q |
10 |
gagaatggagataaaatggaagctcttggaatgtgtcatttggatacatcattttggaacccaaatcataagttattcaagacactaggaatcaagcctt |
109 |
Q |
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|||||||||||||||||||||||||||||| | || ||||| |||||||| |||||||| ||||||| ||||||| ||| || || ||| || |
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| T |
26192102 |
gagaatggagataaaatggaagctcttggagtttgccattttgatacatctgaatggaaccctaatcatattatattcaaacaacttgggattaaggctg |
26192003 |
T |
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| Q |
110 |
ggaagaattcttcagtgtgccacttctttcttgtaaaccatcttttgtggattccaa |
166 |
Q |
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| T |
26192002 |
ggaagaattctccagtgtgtcactttttccctgtgaaccatcttatgtggattccaa |
26191946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 25929041 - 25928936
Alignment:
| Q |
12 |
gaatggagataaaatggaagctcttggaatgtgtcatttggatacatcattttggaacccaaatcataagttattcaagacactaggaatcaagccttgg |
111 |
Q |
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||||||||||||||| |||||| | |||||||| |||||||||||||| |||||| ||| |||||| |||||| ||||||| | |||||||| || |
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| T |
25929041 |
gaatggagataaaatagaagctgtaggaatgtgccatttggatacatctgattggaatccagatcatataatattcaggacactaaggatcaagccaggg |
25928942 |
T |
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| Q |
112 |
aagaat |
117 |
Q |
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|||||| |
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| T |
25928941 |
aagaat |
25928936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 26179823 - 26179754
Alignment:
| Q |
10 |
gagaatggagataaaatggaagctcttggaatgtgtcatttggatacatcattttggaacccaaatcata |
79 |
Q |
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| T |
26179823 |
gagaatggagataaaatggaagctgttggaatttgccatttggacacatctgattggaacccagatcata |
26179754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 26162024 - 26161957
Alignment:
| Q |
12 |
gaatggagataaaatggaagctcttggaatgtgtcatttggatacatcattttggaacccaaatcata |
79 |
Q |
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| T |
26162024 |
gaatggagataaaatggaagttgttggaatttgtcatttggacacatctgattggaacccagatcata |
26161957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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