View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk103-LTR4-TNT-insertion-10 (Length: 675)
Name: Tnk103-LTR4-TNT-insertion-10
Description: Tnk103-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk103-LTR4-TNT-insertion-10 |
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Alignment Details
Target: chr2 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 8 - 601
Target Start/End: Complemental strand, 33168765 - 33168181
Alignment:
| Q |
8 |
aaagggtaatcaaacactacatgtacagggtcttcatgtgcagaatcacaactaaaacaatttgtgcagcactgcatgcctttatcttaaagacgaactc |
107 |
Q |
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| T |
33168765 |
aaagggtaatcaaacactacatgtacagggtcttcatgtgcagaatcacaactaaaacaatttgtacaacactgcatgcctttatcttaaagacgaactc |
33168666 |
T |
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| Q |
108 |
ttgttgacagacaaccgcggcagatacgtcaaactagannnnnnnactttaggtgacactttcaggcatcaaatccccgaccaaaaaccgggtcgacgaa |
207 |
Q |
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| T |
33168665 |
ttgttgacaaacaaccgcggcacatacgtcaaactagatttttt-actttaggtgacactttcaggcatcaaatccccgaccaaaaaccgggtcgacgaa |
33168567 |
T |
|
| Q |
208 |
tatgggatgtgtcaaccaattccttcacacaaagtcagcgaacacttttaaccgagtataaactacttttctccacttttcaaatcaatctatcaatcta |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33168566 |
tatgggatgtgtcaaccaattccttcacacaaagtcagcgaacacttttaaccgagtataaactacttttctccacttttca--------tatcaatcta |
33168475 |
T |
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| Q |
308 |
ttagtgtctagtattgataatcacaaatataggccaaatgcaaatggaactcaaattcaaaatccattgttaagagacatttgaagtaagttatcatgct |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33168474 |
ttagtgtctagtattgataatcacaaatataggccaaatgcaaatggaactcaaattcaaaatccattgttaagagacatttgaagtaagttgtcatgct |
33168375 |
T |
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| Q |
408 |
ccaagcttgaaatttgaaaataattatgacaaataagttttgattacaacaggtaaacgccatttatctatattgaagaaatgaggaattgttttaccgt |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
33168374 |
ccaagcttgaaatttgaaaataattatgacaaataagttttgattacaacaggtaaacgccatttatctgtattgaagaaatgaggatttgttttaccgt |
33168275 |
T |
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| Q |
508 |
cgtcttttattgcaagtagttgaacggtttggtccaaactaattagtttgaacaacaactactactaaaaagattttgtagggaaaacattgta |
601 |
Q |
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| T |
33168274 |
cgtcttttattgcaagtagttgaacggtttggtccaaactaattagtttgaacaacaactactactaaaaagattttgtagggaaaacattgta |
33168181 |
T |
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