View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk103-LTR4-TNT-insertion-3 (Length: 397)
Name: Tnk103-LTR4-TNT-insertion-3
Description: Tnk103-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk103-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 8 - 386
Target Start/End: Original strand, 26438325 - 26438703
Alignment:
| Q |
8 |
ccatttcccaaattattaaaccagcttggaacccttccattgatttggttgtaagatagatttaaatactcaagagtttttaactcattgaggaagcttg |
107 |
Q |
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| T |
26438325 |
ccatttcccaaattattaaaccagcttggaacccttccattgatttggttgtaagatagatctaaattctcaagagtttttaactcattgaggaagcttg |
26438424 |
T |
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| Q |
108 |
gaaaactcttgagtttgcatgatgataaacttaatccaagaaggttagggaaggtgaagttactttcattgtgtaagctaaaagggataagattaatttg |
207 |
Q |
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| T |
26438425 |
ggaaactcttgagtttgcatgatgataaacttaatccaagaaggttgggtaaggtgaagtcactttcattgtgtaagctaaaagggataagattaatttg |
26438524 |
T |
|
| Q |
208 |
agaaaggtaaaggtaccgcagattccgtagctttgagaatttgtgaaaaactacactcaagttatttgatgatagatccaaatgttccagatttttcata |
307 |
Q |
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| T |
26438525 |
agaaaggtaaaggtaatgcagaatccatagctttgaaaatttgtgaaaagctacactcaagttatttgatgataggtccaataataccagatttttcata |
26438624 |
T |
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| Q |
308 |
tcaaacattgagtttggaatattaccatgtagcctagtataagacagatcaacatgtgtcaaggaataagcagagaatt |
386 |
Q |
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| T |
26438625 |
tcaaacattgagtttggaatattaccatgtagcctattatgagaaagatcaacttctgtcaaagaataagcagagaatt |
26438703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 26451694 - 26451901
Alignment:
| Q |
8 |
ccatttcccaaattattaaaccagcttggaacccttccattgatttggttgtaagatagatttaaatactcaagagtttttaactcattgaggaagcttg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
26451694 |
ccatttcccaaattattaaaccagcttggaacccttccattgatttggttgtaagatagatctaaattctcaagagtttttaactcattgaggaagcttg |
26451793 |
T |
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| Q |
108 |
gaaaactcttgagtttgcatgatgataaacttaatccaagaaggttagggaaggtgaagttactttcattgtgtaagctaaaagggataagattaatttg |
207 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26451794 |
ggaaactcttgagtttgcatgatgataaacttaatccaagaaggttgggtaaggtgaagtcactttcattgtgtaagctaaaagggataagattaatttg |
26451893 |
T |
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| Q |
208 |
agaaaggt |
215 |
Q |
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|||||||| |
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| T |
26451894 |
agaaaggt |
26451901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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