View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Tnk103-LTR4-TNT-insertion-4 (Length: 837)

Name: Tnk103-LTR4-TNT-insertion-4
Description: Tnk103-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Tnk103-LTR4-TNT-insertion-4
Tnk103-LTR4-TNT-insertion-4
[»] chr5 (9 HSPs)
chr5 (192-327)||(27842395-27842530)
chr5 (192-327)||(18270773-18270908)
chr5 (194-326)||(34685818-34685950)
chr5 (197-323)||(34430460-34430586)
chr5 (195-331)||(34678670-34678806)
chr5 (20-146)||(32251854-32251980)
chr5 (10-82)||(27843195-27843267)
chr5 (194-302)||(34422209-34422317)
chr5 (194-310)||(34649200-34649316)
[»] chr1 (3 HSPs)
chr1 (10-146)||(23996777-23996913)
chr1 (198-326)||(2068123-2068251)
chr1 (192-257)||(40847515-40847580)
[»] chr3 (2 HSPs)
chr3 (10-135)||(45967271-45967396)
chr3 (11-64)||(23049861-23049914)
[»] chr7 (2 HSPs)
chr7 (10-146)||(25107039-25107175)
chr7 (10-64)||(35515875-35515929)
[»] chr4 (2 HSPs)
chr4 (10-64)||(26169516-26169570)
chr4 (10-64)||(32807731-32807785)
[»] chr8 (1 HSPs)
chr8 (9-64)||(38738170-38738225)
[»] chr6 (1 HSPs)
chr6 (9-64)||(18673110-18673165)
[»] chr2 (1 HSPs)
chr2 (10-96)||(21578966-21579052)


Alignment Details
Target: chr5 (Bit Score: 120; Significance: 6e-61; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 192 - 327
Target Start/End: Complemental strand, 27842530 - 27842395
Alignment:
Q  192 ttattaaaatagcatattagagaaagcatctgcagcaaaaggcttgttctcttttcttaagtactcagctagagtacaagatagtcctcaactccaagct 291  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  27842530 ttattaaaatagcatattagagaaagcacctgcggcaaaaggcttgttctcttttcttaaggactcagctggagtacaagatagtcctcaactccaagct 27842431  T
Q  292 cacgctgaaaaagtttttggactggtaagtataatc 327  Q
    ||||||||||||||||||||||||||||||||||||    
T  27842430 cacgctgaaaaagtttttggactggtaagtataatc 27842395  T

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Target: chr5; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 192 - 327
Target Start/End: Original strand, 18270773 - 18270908
Alignment:
Q  192 ttattaaaatagcatattagagaaagcatctgcagcaaaaggcttgttctcttttcttaagtactcagctagagtacaagatagtcctcaactccaagct 291  Q
    |||||||||||| |||||||| |||||| |||||||||| ||| ||||||||||||||||| | |||||| ||||||||||||||||| ||||||||||     
T  18270773 ttattaaaatagtatattagacaaagcacctgcagcaaagggcatgttctcttttcttaaggattcagctggagtacaagatagtcctaaactccaagcc 18270872  T
Q  292 cacgctgaaaaagtttttggactggtaagtataatc 327  Q
    ||||||||||||||||||||| |||| ||| |||||    
T  18270873 cacgctgaaaaagtttttggaatggtgagtttaatc 18270908  T

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Target: chr5; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 194 - 326
Target Start/End: Original strand, 34685818 - 34685950
Alignment:
Q  194 attaaaatagcatattagagaaagcatctgcagcaaaaggcttgttctcttttcttaagtactcagctagagtacaagatagtcctcaactccaagctca 293  Q
    |||||||||| ||||||||||||||| |||||||||| ||  ||||||||||||||||| ||||| |  |||||||||||||||| ||||||||||||||    
T  34685818 attaaaatagtatattagagaaagcacctgcagcaaagggtatgttctcttttcttaaggactcaacgggagtacaagatagtccccaactccaagctca 34685917  T
Q  294 cgctgaaaaagtttttggactggtaagtataat 326  Q
    ||||||||||||||||||| |||| ||| ||||    
T  34685918 cgctgaaaaagtttttggaatggtgagtgtaat 34685950  T

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Target: chr5; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 197 - 323
Target Start/End: Complemental strand, 34430586 - 34430460
Alignment:
Q  197 aaaatagcatattagagaaagcatctgcagcaaaaggcttgttctcttttcttaagtactcagctagagtacaagatagtcctcaactccaagctcacgc 296  Q
    ||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||  |  || || |||||||||||||||||||||| |||||||| ||    
T  34430586 aaaatagtatattagagaaagcacctgcagcaaaaggcatgttctcttttcttaaagatacaactggagtacaagatagtcctcaacttcaagctcatgc 34430487  T
Q  297 tgaaaaagtttttggactggtaagtat 323  Q
    || ||||||||||| | ||||||||||    
T  34430486 tgcaaaagtttttgaaatggtaagtat 34430460  T

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Target: chr5; HSP #5
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 195 - 331
Target Start/End: Original strand, 34678670 - 34678806
Alignment:
Q  195 ttaaaatagcatattagagaaagcatctgcagcaaaaggcttgttctcttttcttaagtactcagctagagtacaagatagtcctcaactccaagctcac 294  Q
    |||||| || ||||| ||||||||| |||||||||| ||  ||||||||||||||||| |||||||| ||||||||||||||||| |||| ||||  ||     
T  34678670 ttaaaacagtatattggagaaagcacctgcagcaaagggtatgttctcttttcttaaggactcagctggagtacaagatagtcctaaacttcaagtccat 34678769  T
Q  295 gctgaaaaagtttttggactggtaagtataatcaaat 331  Q
    |||| ||||||||||||| |||| ||| |||| ||||    
T  34678770 gctggaaaagtttttggaatggtgagtgtaattaaat 34678806  T

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Target: chr5; HSP #6
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 32251980 - 32251854
Alignment:
Q  20 ccaaacaaattacaatgtaaaaataactgagaagatgattccacccaaccacatcctcctatataagattgagcctctagatcaataacccgacggcata 119  Q
    ||||| ||||||||||| |||||||| || ||||||| ||||||| ||||||| ||||||| | |||||||||| |||| ||||||||| || ||    |    
T  32251980 ccaaataaattacaatgcaaaaataaatgggaagatgtttccaccaaaccacaccctcctacacaagattgagcttctatatcaataactcgccgatgga 32251881  T
Q  120 atagattgtccttggtagagagtctat 146  Q
    | ||||||||||| |||||||||||||    
T  32251880 aaagattgtccttagtagagagtctat 32251854  T

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Target: chr5; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 27843267 - 27843195
Alignment:
Q  10 ccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacccaaccacatcctcctata 82  Q
    ||||||||||||||| |||||||||||||||||||| || |||||||||||||||   |||||||||||||||    
T  27843267 ccaaacagagccaaataaattacaatgtaaaaataagtgggaagatgattccacctcgccacatcctcctata 27843195  T

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Target: chr5; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 194 - 302
Target Start/End: Complemental strand, 34422317 - 34422209
Alignment:
Q  194 attaaaatagcatattagagaaagcatctgcagcaaaaggcttgttctcttttcttaagtactcagctagagtacaagatagtcctcaactccaagctca 293  Q
    |||||| ||| ||||||||||||||| |||||||||| ||| ||||||||||||||||| || |  ||   ||| |||||||||||||||| ||||| ||    
T  34422317 attaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttcttaagaacacgcctgaggtaaaagatagtcctcaacttcaagccca 34422218  T
Q  294 cgctgaaaa 302  Q
     ||||||||    
T  34422217 tgctgaaaa 34422209  T

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Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 194 - 310
Target Start/End: Original strand, 34649200 - 34649316
Alignment:
Q  194 attaaaatagcatattagagaaagcatctgcagcaaaaggcttgttctcttttcttaagtactcagctagagtacaagatagtcctcaactccaagctca 293  Q
    |||||||||| ||||| ||||||||| ||||| |||| |   || |||||||||| |||  |||  || ||||||||||||||||  |||||||||||||    
T  34649200 attaaaatagtatatttgagaaagcacctgcaacaaaggatatgctctcttttctgaagggctcgactggagtacaagatagtcccgaactccaagctca 34649299  T
Q  294 cgctgaaaaagtttttg 310  Q
     |||||| |||||||||    
T  34649300 tgctgaacaagtttttg 34649316  T

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Target: chr1 (Bit Score: 73; Significance: 7e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 10 - 146
Target Start/End: Complemental strand, 23996913 - 23996777
Alignment:
Q  10 ccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacccaaccacatcctcctatataagattgagcctctagatcaataacc 109  Q
    ||||||| ||||||||||||||||| |||||||||| || ||||||||||||||   |||||||||||||||| || |||| || ||||  ||||||||     
T  23996913 ccaaacaaagccaaacaaattacaacgtaaaaataagtgggaagatgattccacgacaccacatcctcctatacaatattgggcatctatgtcaataact 23996814  T
Q  110 cgacggcataatagattgtccttggtagagagtctat 146  Q
    ||||| || ||||||||||||||||||||||||||||    
T  23996813 cgacgacagaatagattgtccttggtagagagtctat 23996777  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 198 - 326
Target Start/End: Complemental strand, 2068251 - 2068123
Alignment:
Q  198 aaatagcatattagagaaagcatctgcagcaaaaggcttgttctcttttcttaagtactcagctagagtacaagatagtcctcaactccaagctcacgct 297  Q
    |||||| ||||| ||||||||  |||||||||| ||| ||||||||||||||||| || ||||| ||||||||||||||||| ||||||||  ||| |||    
T  2068251 aaatagtatattggagaaagcccctgcagcaaagggcatgttctcttttcttaaggacacagctggagtacaagatagtcctaaactccaaagtcatgct 2068152  T
Q  298 gaaaaagtttttggactggtaagtataat 326  Q
    ||||||||||||||| |||| ||| ||||    
T  2068151 gaaaaagtttttggaatggtgagtgtaat 2068123  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 40847580 - 40847515
Alignment:
Q  192 ttattaaaatagcatattagagaaagcatctgcagcaaaaggcttgttctcttttcttaagtactc 257  Q
    |||||||||||| ||||| || |||||| |||||||||||||| |||| |||||||| ||| ||||    
T  40847580 ttattaaaatagtatattggataaagcacctgcagcaaaaggcatgttttcttttctaaaggactc 40847515  T

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Target: chr3 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 10 - 135
Target Start/End: Original strand, 45967271 - 45967396
Alignment:
Q  10 ccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacccaaccacatcctcctatataagattgagcctctagatcaataacc 109  Q
    ||||||| ||||||| ||| |||||||||||||||| |||| ||||| ||| ||| ||||||| ||||||| | |||||||||| |||| |||||| |      
T  45967271 ccaaacatagccaaataaactacaatgtaaaaataagtgaggagatgtttcgaccaaaccacaacctcctacacaagattgagcttctacatcaatgatt 45967370  T
Q  110 cgacggcataatagattgtccttggt 135  Q
    ||||| |  || ||||||||||||||    
T  45967371 cgacgacgaaagagattgtccttggt 45967396  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 23049914 - 23049861
Alignment:
Q  11 caaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacc 64  Q
    |||||||| ||||||||||||||||||||||| |  |||||||||  |||||||    
T  23049914 caaacagacccaaacaaattacaatgtaaaaaaaggtgagaagatatttccacc 23049861  T

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Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 10 - 146
Target Start/End: Original strand, 25107039 - 25107175
Alignment:
Q  10 ccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacccaaccacatcctcctatataagattgagcctctagatcaataacc 109  Q
    ||||||| ||||||| |||||||| ||||||||||| || | ||||| ||| ||| ||||||| ||||||| | |||||||||| |||| |||||| |      
T  25107039 ccaaacacagccaaataaattacagtgtaaaaataagtgtggagatgtttcgaccaaaccacaacctcctacacaagattgagcttctacatcaatgatt 25107138  T
Q  110 cgacggcataatagattgtccttggtagagagtctat 146  Q
    ||||| |  || |||||||||||||| || |||||||    
T  25107139 cgacgacgaaagagattgtccttggtcgatagtctat 25107175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 35515929 - 35515875
Alignment:
Q  10 ccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacc 64  Q
    ||||| ||||||||||||| ||||||||||||| |  |||||||||| |||||||    
T  35515929 ccaaatagagccaaacaaaatacaatgtaaaaaaaggtgagaagatgtttccacc 35515875  T

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Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 26169516 - 26169570
Alignment:
Q  10 ccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacc 64  Q
    ||||||||||||||| |||||||||||||||||||| |||||| ||| |||||||    
T  26169516 ccaaacagagccaaataaattacaatgtaaaaataagtgagaatatgtttccacc 26169570  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 32807731 - 32807785
Alignment:
Q  10 ccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacc 64  Q
    ||||||||| ||||| | |||||||||||||||||| |||||| ||| |||||||    
T  32807731 ccaaacagacccaaaaacattacaatgtaaaaataagtgagaatatgtttccacc 32807785  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 38738225 - 38738170
Alignment:
Q  9 accaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacc 64  Q
    ||||||||||||||||||||  ||||||||| ||||| || ||||||| |||||||    
T  38738225 accaaacagagccaaacaaagaacaatgtaacaataagtgtgaagatgtttccacc 38738170  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 18673165 - 18673110
Alignment:
Q  9 accaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacc 64  Q
    ||||||||||||||||||||  ||||||||| ||||| || ||||||| |||||||    
T  18673165 accaaacagagccaaacaaagaacaatgtaacaataagtgtgaagatgtttccacc 18673110  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 21578966 - 21579052
Alignment:
Q  10 ccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacccaaccacatcctcctatataagattgagcctc 96  Q
    ||||||| ||||| | ||| |||||||||||||||| || ||||||| ||| ||| | || || ||||||| | |||||||||||||    
T  21578966 ccaaacacagccatagaaactacaatgtaaaaataagtgtgaagatgtttctaccaagccgcaacctcctacacaagattgagcctc 21579052  T

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