View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk103-LTR4-TNT-insertion-7 (Length: 196)
Name: Tnk103-LTR4-TNT-insertion-7
Description: Tnk103-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk103-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 9040107 - 9039958
Alignment:
| Q |
8 |
tcatatacattcaaaaggaagcattctgtttaatagaatcgtagaagaaatggacttctaaattattcaaactttactgacaatgttttggaatttacaa |
107 |
Q |
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| T |
9040107 |
tcatatacattcaaaaggaagcattctgtttaattgaatcgtagaagaaatggacttctaaattattcaaactttactgacaatgttttggaatttacaa |
9040008 |
T |
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| Q |
108 |
gaggatagtataagaatggtgctacagnnnnnnnatttgaccaacaattt |
157 |
Q |
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| T |
9040007 |
gaggatagtataagaatggtgctacagtttttttatttgaccaacaattt |
9039958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 9025069 - 9024943
Alignment:
| Q |
13 |
tacattcaaaaggaagcattctgtttaatagaatcgtagaagaaatggacttctaaattattcaaactttactgacaatgt-------tttggaatttac |
105 |
Q |
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| T |
9025069 |
tacattcaaaaggaagcattctgtttaatagaatcgtaggggaaatggacttctagattattcaaactttactgaaaatgttcgcaaatctggaatttac |
9024970 |
T |
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| Q |
106 |
aagaggatagtataagaatggtgctac |
132 |
Q |
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| T |
9024969 |
aagaggatagtataagaatggtgctac |
9024943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 134
Target Start/End: Complemental strand, 1490984 - 1490858
Alignment:
| Q |
12 |
atacattcaaaaggaagcattctgtttaatagaatcgtagaagaaatggacttctaaattattcaaactttactgacaatgt-----tttggaatttaca |
106 |
Q |
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| T |
1490984 |
atacattctaaaggaagcattccgtttaatagaatcataggggaaatggacttctagattctt-aaactttactgacagtttgcaaatctggaattgata |
1490886 |
T |
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| Q |
107 |
agaggatagtataagaatggtgctacag |
134 |
Q |
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| T |
1490885 |
agtggatagtataagaatggtgctacag |
1490858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 11832053 - 11832129
Alignment:
| Q |
12 |
atacattcaaaaggaagcattctgtttaatagaatcgtagaagaaatggacttctaaattattcaaactttactgaca |
89 |
Q |
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| T |
11832053 |
atacattccaaaggaagcattccttttaatagaatcataggggaaatggacttctagattatt-aaactttactgaca |
11832129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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