View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk103-LTR4-TNT-insertion-8 (Length: 378)
Name: Tnk103-LTR4-TNT-insertion-8
Description: Tnk103-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk103-LTR4-TNT-insertion-8 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 368
Target Start/End: Original strand, 38270116 - 38270475
Alignment:
| Q |
8 |
tgatagggattggacaatgtgaattaggatttctagttgtttaaagtgtttgagttgaaaaagagggaaggtgagnnnnnnnntggatttcataaagcag |
107 |
Q |
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| T |
38270116 |
tgatagggattggacaatgtgaattaggatttctagttgtttaaagtgtttgagttgaaaaagagggaaggtgagaaaaaaa-tggatttcataaagcag |
38270214 |
T |
|
| Q |
108 |
tataacatgtcttttctaaggtgtgtgcattcatgtctcttacaggaaatagtggtgggacacacttaactcatattataaatttataatcaatcaaagt |
207 |
Q |
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| T |
38270215 |
tataacatgtcttttctaaggtgtgtgcattcatgtctcttacaggaaatagtggtgggacacacttaactcatattataaatttataatcaatcaaagt |
38270314 |
T |
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| Q |
208 |
gaagacattattatatgaaaacaaaaaagatataataaatacaatgcttgtaactgaagttaattatgaaatgtaaattttaagtttcatattaagaaat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38270315 |
gaagacattattatatgaaaacaaaaaagatataataaatacaatgcttgtaactgaagttaattatgaaatgaaaattttaagtttcatattaagaaat |
38270414 |
T |
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| Q |
308 |
ggcataaactatttcactctgttcaagaagttgtcacactaacttcaaaataactgaatta |
368 |
Q |
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| T |
38270415 |
ggcataaactatttcactctgttcaagcagttgtcacactaacttcaaaataactgaatta |
38270475 |
T |
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Back To:
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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 368
Target Start/End: Complemental strand, 32553819 - 32553768
Alignment:
| Q |
317 |
tatttcactctgttcaagaagttgtcacactaacttcaaaataactgaatta |
368 |
Q |
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| T |
32553819 |
tatttcactttgttgaaaaagttggcacactaactttaaaataactgaatta |
32553768 |
T |
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