View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk103-LTR4-TNT-insertion-9 (Length: 734)
Name: Tnk103-LTR4-TNT-insertion-9
Description: Tnk103-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk103-LTR4-TNT-insertion-9 |
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Alignment Details
Target: chr1 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 10 - 594
Target Start/End: Original strand, 3308055 - 3308640
Alignment:
| Q |
10 |
tgtgtgttatgatctaagtgtggttgaaaatatgcaagtaggaatcgaatatctttaaggaagcagtcgagaacaaggataattagaaatggcaatatga |
109 |
Q |
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| T |
3308055 |
tgtgtgttatgatctaagtgtggttgaaaatatgcaagtaggaatcgaatatctttaaggaagcagtcgagaacaatgataattagaaatggcaatatga |
3308154 |
T |
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| Q |
110 |
aatgaatgaggaaaggagttcacggaagaagaaagtgaatgaggaaaagaatttatggagaagaatcaaacttgaaaacttgtaggactacctaaggatc |
209 |
Q |
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| T |
3308155 |
aatgaatgaggaaaagagttcacggaagaagaaagtgaatgaggaaaagaattcatggagaagaatcaaacttgaaaacttgtgggactacctaaggatc |
3308254 |
T |
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| Q |
210 |
aaagggtagttggatggaagtggaggtcgatgcctataacagggttcaagaatttcttggacttgatcagttttgctgaagagtaattcgagcactcaag |
309 |
Q |
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| T |
3308255 |
aaagggtagttggatggaagtggaggtcgatgcctataacagggttcaagaatttctcggacttgatcagttttgctgaagagtaatttcggcactcaag |
3308354 |
T |
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| Q |
310 |
agagcaacaagtggttgatgggtaaatattgagcattaccacttatttgaagtcaaagtggagaattatagcgagtatgtcttcaaatatgtgtttttag |
409 |
Q |
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| T |
3308355 |
agagcaacaagtggttgatgggtaaatattgagcattaccacttatttgaagtcaaagtggagaattatggcgagtatgtcttcaaatatgtgtttttag |
3308454 |
T |
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| Q |
410 |
cttctagaggtgacgatttaaatcatggtaattggggtgaaaggttgattcgaaccttggtggtgaaaatgggttcaagtcac-tgtttttcttggttga |
508 |
Q |
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| T |
3308455 |
cttctagaggtgatgatttaaatcaaggtaattggggtgaaaggttgattcgagccttggtggtgaaaatgggttcaagtcacttttttttcttggttga |
3308554 |
T |
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| Q |
509 |
ttcgaatcaggggtagcatgattcaaattggatatttgctctctcccgcaaacaaatcattttcaggctgcattgtgtaaacaatc |
594 |
Q |
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| T |
3308555 |
ttcgaatcaggggtagcatgattcaaatttgatatttgctctctcccgcaaataaatcattttcaggctgaattgtgtaaacaatc |
3308640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 597 - 724
Target Start/End: Original strand, 3308668 - 3308800
Alignment:
| Q |
597 |
ttttgttctttcgattgattgtttgatttctctgcacattgcttctaggtttcttctagtttaaatcgctattttcttgggc----tagttttggttctc |
692 |
Q |
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| T |
3308668 |
ttttgttctttcgattgattttgtgatttctctacacattgcttctaggtttcttctagtttaaatcgctattttcttgggctatttagttttggttctc |
3308767 |
T |
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| Q |
693 |
gctgttatttgttccac-ttatcttgttgaatt |
724 |
Q |
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| T |
3308768 |
gctgttatttgttccactttatcttgttgaatt |
3308800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 252 - 298
Target Start/End: Original strand, 4386380 - 4386426
Alignment:
| Q |
252 |
ggttcaagaatttcttggacttgatcagttttgctgaagagtaattc |
298 |
Q |
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| T |
4386380 |
ggttcaagaattgcttggacttggtcaattttgttgaagagtaattc |
4386426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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