View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk366-LTR4-TNT-insertion-1 (Length: 801)
Name: Tnk366-LTR4-TNT-insertion-1
Description: Tnk366-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk366-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 518; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 230 - 787
Target Start/End: Complemental strand, 22363228 - 22362671
Alignment:
| Q |
230 |
gtgtgactcaatttagtatattttttcttctcaaaatttaacatcacaattttaaagcttctattgccttgaagcaacaagtgaacatcaagtcattaga |
329 |
Q |
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| T |
22363228 |
gtgtgactcaatttagtatttttttacttctcaaaatttaacatcacaattttaaagcttctattgccttgaagcaacaagtgaacatcaagtcattaga |
22363129 |
T |
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| Q |
330 |
gaaatttagagtgaaattttcaacttggatgcaggggtagcaaagttgggattcatatatggagatgaactagaggaaaggagaataaagacgggggatt |
429 |
Q |
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| T |
22363128 |
gaaatttagagtgaaattttcaacttggatgcaggggtagcaaagttgggattcatatatggagatgaactagaggaaaggagaataaagacaggggatt |
22363029 |
T |
|
| Q |
430 |
tgtatgtaattccagcaggtactgtattttatttagtgaatataggtgaaggtcagagacttcatgtcatatgcagttttgacccctctacaagtttagg |
529 |
Q |
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| T |
22363028 |
tgtatgtaattccagcaggtactgtattttatttagtgaatataggtgaaggtcagagacttcatgtcatatgcagttttgacccctctacaagtttagg |
22362929 |
T |
|
| Q |
530 |
tgatacttttcaggtacatatatgcatctataatttcacatgtttcacttacatattatccactttatgctaacttgttaccatgtttttctaacattct |
629 |
Q |
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| T |
22362928 |
tgatacttttcaggtacatatatgcttctataatttcacatgtttcactcacatattatccactttatgttatcttgttaccatgtttttctaacattct |
22362829 |
T |
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| Q |
630 |
tcaattttatgtagcctttctatattggtggaggagataatcaacaatctgtgctcgctggattcggaccgacaattcttgaaactgcatttaatgtaag |
729 |
Q |
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| T |
22362828 |
tcaattttatgtagcctttctatattggtggaggagataatcaacaatctgtgcttgctggattcggaccgacaattcttgaaactgcatttaatgtaag |
22362729 |
T |
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| Q |
730 |
ctattgcctaatgcagcaatattacaatatatcaagtggatctaaattgtgtattatt |
787 |
Q |
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| T |
22362728 |
ctattgcctaatgtagcaatattacaatatatcaagtgggtctaaattgtgtattatt |
22362671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 122 - 245
Target Start/End: Complemental strand, 22363368 - 22363245
Alignment:
| Q |
122 |
tgttgtgtcggtgcctggacacacttaatctaaggagtctctgttcttcgtagaactagagaatacaaggaactacgcctaaagtatgaagagttaatat |
221 |
Q |
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| T |
22363368 |
tgttgtgtcggtgcctggacacacttaatccgaggagtctctgttcttcatagaactagagaatacaaggaactaggcctaaagtatgaagagttaatat |
22363269 |
T |
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| Q |
222 |
gcatttttgtgtgactcaatttag |
245 |
Q |
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| T |
22363268 |
gcatttttgtgtgactcaatttag |
22363245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 22363319 - 22363268
Alignment:
| Q |
72 |
atagaactagagaatacaaggaactaggcctaaagtatgaagagttaatatg |
123 |
Q |
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| T |
22363319 |
atagaactagagaatacaaggaactaggcctaaagtatgaagagttaatatg |
22363268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 22363377 - 22363340
Alignment:
| Q |
36 |
aagtgttggtgttgtgtcggtgcctggacacacttaat |
73 |
Q |
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| T |
22363377 |
aagtgttggtgttgtgtcggtgcctggacacacttaat |
22363340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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