View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Tnk366-LTR4-TNT-insertion-3 (Length: 354)

Name: Tnk366-LTR4-TNT-insertion-3
Description: Tnk366-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Tnk366-LTR4-TNT-insertion-3
Tnk366-LTR4-TNT-insertion-3
[»] scaffold0055 (29 HSPs)
scaffold0055 (146-290)||(11333-11477)
scaffold0055 (146-279)||(11172-11305)
scaffold0055 (146-279)||(29985-30118)
scaffold0055 (146-279)||(36532-36665)
scaffold0055 (146-279)||(44194-44327)
scaffold0055 (146-279)||(75581-75714)
scaffold0055 (146-279)||(18680-18813)
scaffold0055 (146-279)||(56919-57052)
scaffold0055 (147-335)||(30104-30291)
scaffold0055 (146-260)||(12436-12550)
scaffold0055 (146-260)||(34363-34477)
scaffold0055 (146-260)||(35487-35601)
scaffold0055 (146-260)||(53535-53649)
scaffold0055 (192-260)||(43195-43263)
scaffold0055 (192-260)||(55909-55977)
scaffold0055 (192-260)||(74581-74649)
scaffold0055 (192-260)||(19756-19824)
scaffold0055 (156-217)||(10920-10981)
scaffold0055 (302-335)||(18799-18832)
scaffold0055 (302-335)||(36513-36546)
scaffold0055 (302-335)||(44175-44208)
scaffold0055 (302-335)||(56900-56933)
scaffold0055 (302-334)||(19838-19870)
scaffold0055 (302-334)||(34344-34376)
scaffold0055 (302-334)||(35468-35500)
scaffold0055 (302-334)||(43149-43181)
scaffold0055 (302-334)||(53516-53548)
scaffold0055 (302-334)||(55863-55895)
scaffold0055 (302-334)||(74535-74567)
[»] scaffold0052 (27 HSPs)
scaffold0052 (146-290)||(73058-73202)
scaffold0052 (146-279)||(17098-17231)
scaffold0052 (146-279)||(40579-40712)
scaffold0052 (146-279)||(42484-42617)
scaffold0052 (146-279)||(54523-54656)
scaffold0052 (146-279)||(65947-66080)
scaffold0052 (146-279)||(73230-73363)
scaffold0052 (146-279)||(2562-2695)
scaffold0052 (147-335)||(65774-65961)
scaffold0052 (146-260)||(71985-72099)
scaffold0052 (146-260)||(61587-61701)
scaffold0052 (192-260)||(3638-3706)
scaffold0052 (192-260)||(30306-30374)
scaffold0052 (192-260)||(41654-41722)
scaffold0052 (192-260)||(53515-53583)
scaffold0052 (192-260)||(18163-18231)
scaffold0052 (156-217)||(73554-73615)
scaffold0052 (302-335)||(2681-2714)
scaffold0052 (302-335)||(17217-17250)
scaffold0052 (302-335)||(40698-40731)
scaffold0052 (302-335)||(54504-54537)
scaffold0052 (302-334)||(3720-3752)
scaffold0052 (302-334)||(18245-18277)
scaffold0052 (302-334)||(30260-30292)
scaffold0052 (302-334)||(41736-41768)
scaffold0052 (302-334)||(53469-53501)
scaffold0052 (302-334)||(61688-61720)
[»] scaffold0021 (13 HSPs)
scaffold0021 (146-290)||(51366-51510)
scaffold0021 (146-335)||(40686-40874)
scaffold0021 (146-291)||(40860-41005)
scaffold0021 (146-279)||(51538-51671)
scaffold0021 (146-266)||(41026-41146)
scaffold0021 (149-259)||(39224-39334)
scaffold0021 (149-260)||(50230-50341)
scaffold0021 (146-260)||(95758-95872)
scaffold0021 (210-259)||(34511-34560)
scaffold0021 (192-260)||(49187-49255)
scaffold0021 (302-335)||(40667-40700)
scaffold0021 (302-334)||(49141-49173)
scaffold0021 (302-334)||(95739-95771)
[»] chr4 (1 HSPs)
chr4 (10-129)||(18926213-18926332)
[»] scaffold0515 (2 HSPs)
scaffold0515 (146-279)||(10620-10753)
scaffold0515 (152-260)||(11684-11792)
[»] scaffold0152 (6 HSPs)
scaffold0152 (146-279)||(37016-37149)
scaffold0152 (146-279)||(18188-18321)
scaffold0152 (166-279)||(28240-28353)
scaffold0152 (152-260)||(19254-19362)
scaffold0152 (152-260)||(33350-33458)
scaffold0152 (152-260)||(38080-38188)
[»] scaffold1084 (1 HSPs)
scaffold1084 (155-269)||(2870-2984)
[»] chr5 (1 HSPs)
chr5 (146-260)||(21098470-21098584)
[»] chr6 (1 HSPs)
chr6 (156-260)||(9477426-9477530)
[»] chr7 (1 HSPs)
chr7 (91-129)||(4661327-4661365)
[»] chr1 (1 HSPs)
chr1 (156-200)||(31106806-31106850)


Alignment Details
Target: scaffold0055 (Bit Score: 137; Significance: 2e-71; HSPs: 29)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 146 - 290
Target Start/End: Complemental strand, 11477 - 11333
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  11477 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttcactgagaaattttggcaattttgcacgcgggaatcgttaactg 11378  T
Q  246 cgaatattttaagcgccagaaagtcaagaaagcgcaaaatcgcaa 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  11377 cgaatattttaagcgccagaaagtcaagaaagcgcaaaatcgcaa 11333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 146 - 279
Target Start/End: Complemental strand, 11305 - 11172
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  11305 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttcaccgagaaattttggcaattttgcatgcgggaatcgttaactg 11206  T
Q  246 cgaatattttaagcgccagaaagtcaagaaagcg 279  Q
    |||||||||||||||||||||||||| |||||||    
T  11205 cgaatattttaagcgccagaaagtcatgaaagcg 11172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 146 - 279
Target Start/End: Complemental strand, 30118 - 29985
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  30118 gggacgaatcttgttccccaaaaattcaggcgtgtttgggacatcataaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgtaaactg 30019  T
Q  246 cgaatattttaagcgccagaaagtcaagaaagcg 279  Q
    ||||||||||||||||||||||||||||||||||    
T  30018 cgaatattttaagcgccagaaagtcaagaaagcg 29985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 146 - 279
Target Start/End: Original strand, 36532 - 36665
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36532 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcgtaaggaccttctccgagaaattttggcaattttgcacgcgggaatcgttaactg 36631  T
Q  246 cgaatattttaagcgccagaaagtcaagaaagcg 279  Q
    ||||||| ||||||||||||||||||||||||||    
T  36632 cgaatatcttaagcgccagaaagtcaagaaagcg 36665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 146 - 279
Target Start/End: Original strand, 44194 - 44327
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44194 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcgtaaggaccttctccgagaaattttggcaattttgcacgcgggaatcgttaactg 44293  T
Q  246 cgaatattttaagcgccagaaagtcaagaaagcg 279  Q
    ||||||| ||||||||||||||||||||||||||    
T  44294 cgaatatcttaagcgccagaaagtcaagaaagcg 44327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 146 - 279
Target Start/End: Original strand, 75581 - 75714
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  75581 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttctccgagaaattttggcaattttgcacgtgggaatcgttaactg 75680  T
Q  246 cgaatattttaagcgccagaaagtcaagaaagcg 279  Q
    ||||||| ||||||||||||||||||||||||||    
T  75681 cgaatatcttaagcgccagaaagtcaagaaagcg 75714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #7
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 146 - 279
Target Start/End: Complemental strand, 18813 - 18680
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18813 gggacgaatcttgttccccaaaaattcaggcatgtttaggacatcgtaaggaccttctccgagaaattttggcaattttgcacgcgggaatcgttaactg 18714  T
Q  246 cgaatattttaagcgccagaaagtcaagaaagcg 279  Q
    ||||||| ||||||||||||||||||||||||||    
T  18713 cgaatatcttaagcgccagaaagtcaagaaagcg 18680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #8
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 146 - 279
Target Start/End: Original strand, 56919 - 57052
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  56919 gggacgaatcttgttccccgaaaattcaggcatgtttgggacatcgtaaggaccttctccgagaaattttggcaattttgcacgcgggaatcgttaactg 57018  T
Q  246 cgaatattttaagcgccagaaagtcaagaaagcg 279  Q
    ||||||| ||||||||||||||||||||||||||    
T  57019 cgaatatcttaagcgccagaaagtcaagaaagcg 57052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #9
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 147 - 335
Target Start/End: Complemental strand, 30291 - 30104
Alignment:
Q  147 ggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactgc 246  Q
    ||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||    
T  30291 ggacgaatcttgttccccaaaaaatcaggcgtgttcgggacatcataaggaccttcaccgagaaatttgggcaattttgcacgcgggaatcgtcaactgc 30192  T
Q  247 gaatattttaagcgccagaaagtcaagaaagcgcaaaatcgcaacnnnnnnnnnncaaatgagcacccatccacggcacgaatcttgtt 335  Q
    ||||||| ||||||||||||||||| ||||||| |||||| || |          ||||||||||||||||||||| ||||||||||||    
T  30191 gaatattctaagcgccagaaagtcatgaaagcggaaaatcacagc-tttttttttcaaatgagcacccatccacgggacgaatcttgtt 30104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #10
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 146 - 260
Target Start/End: Complemental strand, 12550 - 12436
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |  ||||||||||| |||| ||||||||||||||||||||||||    
T  12550 gggacgaatcttgtcccccaaaaattcaggcatgtttgggacatcataaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactg 12451  T
Q  246 cgaatattttaagcg 260  Q
    |||||||||||||||    
T  12450 cgaatattttaagcg 12436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #11
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 146 - 260
Target Start/End: Original strand, 34363 - 34477
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |  ||||||||||| |||| ||| |||| |||| ||||||| ||    
T  34363 gggacgaatcttgtcccccaaaaattcaggcatgtttgggacatcgtaaggacctccagcgagaaattttagcaaattttcacgtgggattcgttaattg 34462  T
Q  246 cgaatattttaagcg 260  Q
    |||||||||||||||    
T  34463 cgaatattttaagcg 34477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #12
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 146 - 260
Target Start/End: Original strand, 35487 - 35601
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |  ||||||||||| |||| ||| |||| |||| ||||||| ||    
T  35487 gggacgaatcttgtcccccaaaaattcaggcatgtttgggacatcgtaaggacctccagcgagaaattttagcaaattttcacgtgggattcgttaattg 35586  T
Q  246 cgaatattttaagcg 260  Q
    |||||||||||||||    
T  35587 cgaatattttaagcg 35601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #13
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 146 - 260
Target Start/End: Original strand, 53535 - 53649
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |  ||||||||||| |||| ||| |||| |||| ||||||| ||    
T  53535 gggacgaatcttgtcccccaaaaattcaggcatgtttgggacatcgtaaggacctccagcgagaaattttagcaaattttcacgtgggattcgttaattg 53634  T
Q  246 cgaatattttaagcg 260  Q
    |||||||||||||||    
T  53635 cgaatattttaagcg 53649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 43195 - 43263
Alignment:
Q  192 taaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 260  Q
    ||||||||| |  |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  43195 taaggacctccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcg 43263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 55909 - 55977
Alignment:
Q  192 taaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 260  Q
    ||||||||| |  |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  55909 taaggacctccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcg 55977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 74581 - 74649
Alignment:
Q  192 taaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 260  Q
    ||||||||| |  |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  74581 taaggacctccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcg 74649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 19824 - 19756
Alignment:
Q  192 taaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 260  Q
    ||||||||| |  ||||||||||||| || ||||||||||||| ||||||| ||| |||||||||||||    
T  19824 taaggacctccagcgagaaattttggaaaatttgcacgcgggattcgttaattgccaatattttaagcg 19756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 10981 - 10920
Alignment:
Q  156 ttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttgg 217  Q
    |||||||||||| |||| ||||||||||||||||||||| ||||| | |||  |||||||||    
T  10981 ttgttccccaaatattcgggcatgtttgggacatcataacgacctccgccgcaaaattttgg 10920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 335
Target Start/End: Complemental strand, 18832 - 18799
Alignment:
Q  302 caaatgagcacccatccacggcacgaatcttgtt 335  Q
    ||||||||||||||||||||| ||||||||||||    
T  18832 caaatgagcacccatccacgggacgaatcttgtt 18799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 335
Target Start/End: Original strand, 36513 - 36546
Alignment:
Q  302 caaatgagcacccatccacggcacgaatcttgtt 335  Q
    ||||||||||||||||||||| ||||||||||||    
T  36513 caaatgagcacccatccacgggacgaatcttgtt 36546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 335
Target Start/End: Original strand, 44175 - 44208
Alignment:
Q  302 caaatgagcacccatccacggcacgaatcttgtt 335  Q
    ||||||||||||||||||||| ||||||||||||    
T  44175 caaatgagcacccatccacgggacgaatcttgtt 44208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 335
Target Start/End: Original strand, 56900 - 56933
Alignment:
Q  302 caaatgagcacccatccacggcacgaatcttgtt 335  Q
    ||||||||||||||||||||| ||||||||||||    
T  56900 caaatgagcacccatccacgggacgaatcttgtt 56933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Complemental strand, 19870 - 19838
Alignment:
Q  302 caaatgagcacccatccacggcacgaatcttgt 334  Q
    ||||||||||||||||||||| |||||||||||    
T  19870 caaatgagcacccatccacgggacgaatcttgt 19838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Original strand, 34344 - 34376
Alignment:
Q  302 caaatgagcacccatccacggcacgaatcttgt 334  Q
    ||||||||||||||||||||| |||||||||||    
T  34344 caaatgagcacccatccacgggacgaatcttgt 34376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Original strand, 35468 - 35500
Alignment:
Q  302 caaatgagcacccatccacggcacgaatcttgt 334  Q
    ||||||||||||||||||||| |||||||||||    
T  35468 caaatgagcacccatccacgggacgaatcttgt 35500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Original strand, 43149 - 43181
Alignment:
Q  302 caaatgagcacccatccacggcacgaatcttgt 334  Q
    ||||||||||||||||||||| |||||||||||    
T  43149 caaatgagcacccatccacgggacgaatcttgt 43181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Original strand, 53516 - 53548
Alignment:
Q  302 caaatgagcacccatccacggcacgaatcttgt 334  Q
    ||||||||||||||||||||| |||||||||||    
T  53516 caaatgagcacccatccacgggacgaatcttgt 53548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Original strand, 55863 - 55895
Alignment:
Q  302 caaatgagcacccatccacggcacgaatcttgt 334  Q
    ||||||||||||||||||||| |||||||||||    
T  55863 caaatgagcacccatccacgggacgaatcttgt 55895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Original strand, 74535 - 74567
Alignment:
Q  302 caaatgagcacccatccacggcacgaatcttgt 334  Q
    ||||||||||||||||||||| |||||||||||    
T  74535 caaatgagcacccatccacgggacgaatcttgt 74567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 137; Significance: 2e-71; HSPs: 27)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 146 - 290
Target Start/End: Original strand, 73058 - 73202
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  73058 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttcactgagaaattttggcaattttgcacgcgggaatcgttaactg 73157  T
Q  246 cgaatattttaagcgccagaaagtcaagaaagcgcaaaatcgcaa 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  73158 cgaatattttaagcgccagaaagtcaagaaagcgcaaaatcgcaa 73202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 146 - 279
Target Start/End: Complemental strand, 17231 - 17098
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17231 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcgtaaggaccttctccgagaaattttggcaattttgcacgcgggaatcgttaactg 17132  T
Q  246 cgaatattttaagcgccagaaagtcaagaaagcg 279  Q
    ||||||| ||||||||||||||||||||||||||    
T  17131 cgaatatcttaagcgccagaaagtcaagaaagcg 17098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 146 - 279
Target Start/End: Complemental strand, 40712 - 40579
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40712 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcgtaaggaccttctccgagaaattttggcaattttgcacgcgggaatcgttaactg 40613  T
Q  246 cgaatattttaagcgccagaaagtcaagaaagcg 279  Q
    ||||||| ||||||||||||||||||||||||||    
T  40612 cgaatatcttaagcgccagaaagtcaagaaagcg 40579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 146 - 279
Target Start/End: Original strand, 42484 - 42617
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  42484 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttctccgagaaattttggcaattttgcacgtgggaatcgttaactg 42583  T
Q  246 cgaatattttaagcgccagaaagtcaagaaagcg 279  Q
    ||||||| ||||||||||||||||||||||||||    
T  42584 cgaatatcttaagcgccagaaagtcaagaaagcg 42617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 146 - 279
Target Start/End: Original strand, 54523 - 54656
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  54523 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcgtaaggaccttctccgagaaattttggcaattttgcacgcgggaatcgttaactg 54622  T
Q  246 cgaatattttaagcgccagaaagtcaagaaagcg 279  Q
    ||||||| ||||||||||||||||||||||||||    
T  54623 cgaatatcttaagcgccagaaagtcaagaaagcg 54656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 146 - 279
Target Start/End: Original strand, 65947 - 66080
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  65947 gggacgaatcttgttccccaaaaattcaggcgtgtttgggacatcataaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgtaaactg 66046  T
Q  246 cgaatattttaagcgccagaaagtcaagaaagcg 279  Q
    ||||||||||||||||||||||||||||||||||    
T  66047 cgaatattttaagcgccagaaagtcaagaaagcg 66080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 146 - 279
Target Start/End: Original strand, 73230 - 73363
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  73230 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttcaccgagaaattttggcaattttgcatgcgggaatcgttaactg 73329  T
Q  246 cgaatattttaagcgccagaaagtcaagaaagcg 279  Q
    |||||||||||||||||||||||||| |||||||    
T  73330 cgaatattttaagcgccagaaagtcatgaaagcg 73363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #8
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 146 - 279
Target Start/End: Complemental strand, 2695 - 2562
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2695 gggacgaatcttgttccccaaaaattcaggcatgtttaggacatcgtaaggaccttctccgagaaattttggcaattttgcacgcgggaatcgttaactg 2596  T
Q  246 cgaatattttaagcgccagaaagtcaagaaagcg 279  Q
    ||||||| ||||||||||||||||||||||||||    
T  2595 cgaatatcttaagcgccagaaagtcaagaaagcg 2562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #9
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 147 - 335
Target Start/End: Original strand, 65774 - 65961
Alignment:
Q  147 ggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactgc 246  Q
    ||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||    
T  65774 ggacgaatcttgttccccaaaaaatcaggcgtgttcgggacatcataaggaccttcaccgagaaatttgggcaattttgcacgcgggaatcgtcaactgc 65873  T
Q  247 gaatattttaagcgccagaaagtcaagaaagcgcaaaatcgcaacnnnnnnnnnncaaatgagcacccatccacggcacgaatcttgtt 335  Q
    ||||||| ||||||||||||||||| ||||||| |||||| || |          ||||||||||||||||||||| ||||||||||||    
T  65874 gaatattctaagcgccagaaagtcatgaaagcggaaaatcacagc-tttttttttcaaatgagcacccatccacgggacgaatcttgtt 65961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #10
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 146 - 260
Target Start/End: Original strand, 71985 - 72099
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |  ||||||||||| |||| ||||||||||||||||||||||||    
T  71985 gggacgaatcttgtcccccaaaaattcaggcatgtttgggacatcataaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactg 72084  T
Q  246 cgaatattttaagcg 260  Q
    |||||||||||||||    
T  72085 cgaatattttaagcg 72099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #11
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 146 - 260
Target Start/End: Complemental strand, 61701 - 61587
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |  ||||||||||| |||| ||| |||| |||| ||||||| ||    
T  61701 gggacgaatcttgtcccccaaaaattcaggcatgtttgggacatcgtaaggacctccagcgagaaattttagcaaattttcacgtgggattcgttaattg 61602  T
Q  246 cgaatattttaagcg 260  Q
    |||||||||||||||    
T  61601 cgaatattttaagcg 61587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 3706 - 3638
Alignment:
Q  192 taaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 260  Q
    ||||||||| |  |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  3706 taaggacctccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcg 3638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 30306 - 30374
Alignment:
Q  192 taaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 260  Q
    ||||||||| |  |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  30306 taaggacctccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcg 30374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 41722 - 41654
Alignment:
Q  192 taaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 260  Q
    ||||||||| |  |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  41722 taaggacctccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcg 41654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 53515 - 53583
Alignment:
Q  192 taaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 260  Q
    ||||||||| |  |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  53515 taaggacctccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcg 53583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 18231 - 18163
Alignment:
Q  192 taaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 260  Q
    ||||||||| |  ||||||||||||| || ||||||||||||| ||||||| ||| |||||||||||||    
T  18231 taaggacctccagcgagaaattttggaaaatttgcacgcgggattcgttaattgccaatattttaagcg 18163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 73554 - 73615
Alignment:
Q  156 ttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttgg 217  Q
    |||||||||||| |||| ||||||||||||||||||||| ||||| | |||  |||||||||    
T  73554 ttgttccccaaatattcgggcatgtttgggacatcataacgacctccgccgcaaaattttgg 73615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 335
Target Start/End: Complemental strand, 2714 - 2681
Alignment:
Q  302 caaatgagcacccatccacggcacgaatcttgtt 335  Q
    ||||||||||||||||||||| ||||||||||||    
T  2714 caaatgagcacccatccacgggacgaatcttgtt 2681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 335
Target Start/End: Complemental strand, 17250 - 17217
Alignment:
Q  302 caaatgagcacccatccacggcacgaatcttgtt 335  Q
    ||||||||||||||||||||| ||||||||||||    
T  17250 caaatgagcacccatccacgggacgaatcttgtt 17217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 335
Target Start/End: Complemental strand, 40731 - 40698
Alignment:
Q  302 caaatgagcacccatccacggcacgaatcttgtt 335  Q
    ||||||||||||||||||||| ||||||||||||    
T  40731 caaatgagcacccatccacgggacgaatcttgtt 40698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 335
Target Start/End: Original strand, 54504 - 54537
Alignment:
Q  302 caaatgagcacccatccacggcacgaatcttgtt 335  Q
    ||||||||||||||||||||| ||||||||||||    
T  54504 caaatgagcacccatccacgggacgaatcttgtt 54537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Complemental strand, 3752 - 3720
Alignment:
Q  302 caaatgagcacccatccacggcacgaatcttgt 334  Q
    ||||||||||||||||||||| |||||||||||    
T  3752 caaatgagcacccatccacgggacgaatcttgt 3720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Complemental strand, 18277 - 18245
Alignment:
Q  302 caaatgagcacccatccacggcacgaatcttgt 334  Q
    ||||||||||||||||||||| |||||||||||    
T  18277 caaatgagcacccatccacgggacgaatcttgt 18245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Original strand, 30260 - 30292
Alignment:
Q  302 caaatgagcacccatccacggcacgaatcttgt 334  Q
    ||||||||||||||||||||| |||||||||||    
T  30260 caaatgagcacccatccacgggacgaatcttgt 30292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Complemental strand, 41768 - 41736
Alignment:
Q  302 caaatgagcacccatccacggcacgaatcttgt 334  Q
    ||||||||||||||||||||| |||||||||||    
T  41768 caaatgagcacccatccacgggacgaatcttgt 41736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Original strand, 53469 - 53501
Alignment:
Q  302 caaatgagcacccatccacggcacgaatcttgt 334  Q
    ||||||||||||||||||||| |||||||||||    
T  53469 caaatgagcacccatccacgggacgaatcttgt 53501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Complemental strand, 61720 - 61688
Alignment:
Q  302 caaatgagcacccatccacggcacgaatcttgt 334  Q
    ||||||||||||||||||||| |||||||||||    
T  61720 caaatgagcacccatccacgggacgaatcttgt 61688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 137; Significance: 2e-71; HSPs: 13)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 146 - 290
Target Start/End: Original strand, 51366 - 51510
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  51366 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttcactgagaaattttggcaattttgcacgcgggaatcgttaactg 51465  T
Q  246 cgaatattttaagcgccagaaagtcaagaaagcgcaaaatcgcaa 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  51466 cgaatattttaagcgccagaaagtcaagaaagcgcaaaatcgcaa 51510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 146 - 335
Target Start/End: Original strand, 40686 - 40874
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| | |||||||||||||    
T  40686 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttcaccgagaaattttggcgattttgcacgagagaatcgttaactg 40785  T
Q  246 cgaatattttaagcgccagaaagtcaagaaagcgcaaaatcgcaacnnnnnnnnnncaaatgagcacccatccacggcacgaatcttgtt 335  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||          ||||||||||||||||||||| ||||||||||||    
T  40786 cgaatattttaagtgccagaaagtcaagaaagcgcaaaatcgcaac-tttttttttcaaatgagcacccatccacgggacgaatcttgtt 40874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 146 - 291
Target Start/End: Original strand, 40860 - 41005
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  40860 gggacgaatcttgttccccaaaaattcaggcatgtttgtgacatcataaggaccttcaccgagaaattttggcaagtttgcacgcgggaatcgttaactg 40959  T
Q  246 cgaatattttaagcgccagaaagtcaagaaagcgcaaaatcgcaac 291  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  40960 cgaatattttaaacgccagaaagtcaagaaagcgcaaaatcgcaac 41005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 146 - 279
Target Start/End: Original strand, 51538 - 51671
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  51538 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttcaccgagaaattttggcaattttgcatgcgggaatcgttaactg 51637  T
Q  246 cgaatattttaagcgccagaaagtcaagaaagcg 279  Q
    |||||||||||||||||||||||||| |||||||    
T  51638 cgaatattttaagcgccagaaagtcatgaaagcg 51671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #5
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 146 - 266
Target Start/End: Original strand, 41026 - 41146
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41026 gggacgaatcttattccccaaaaattcaggcatgttttggacatcataaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactg 41125  T
Q  246 cgaatattttaagcgccagaa 266  Q
    |||||||||||||||||||||    
T  41126 cgaatattttaagcgccagaa 41146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 149 - 259
Target Start/End: Original strand, 39224 - 39334
Alignment:
Q  149 acgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactgcga 248  Q
    ||||||||| |||||||||||||||||||||||| ||||||||  ||||||| |  ||||||||||||||||||||||||||||||||||||||||||||    
T  39224 acgaatcttattccccaaaaattcaggcatgttttggacatcaagaggacctccagcgagaaattttggcaattttgcacgcgggaatcgttaactgcga 39323  T
Q  249 atattttaagc 259  Q
    |||||||||||    
T  39324 atattttaagc 39334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 149 - 260
Target Start/End: Original strand, 50230 - 50341
Alignment:
Q  149 acgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactgcga 248  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||| || |   |||| |||||||||||| ||||||||| |||||||||||||||    
T  50230 acgaatcttgtcccccaaaaattcaggcatgtttgggacatcaaaaggatctccagagagagattttggcaattatgcacgcggaaatcgttaactgcga 50329  T
Q  249 atattttaagcg 260  Q
    ||||||||||||    
T  50330 atattttaagcg 50341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 146 - 260
Target Start/End: Original strand, 95758 - 95872
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    |||||||||||||| | |||||||||||||||||||||| ||||||||||||||| |  ||||||||||| |||| ||||||||||||| ||||||  ||    
T  95758 gggacgaatcttgtcctccaaaaattcaggcatgtttggcacatcataaggacctccagcgagaaattttagcaaatttgcacgcgggattcgttacttg 95857  T
Q  246 cgaatattttaagcg 260  Q
    |||||||||||||||    
T  95858 cgaatattttaagcg 95872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 34511 - 34560
Alignment:
Q  210 aattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagc 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34511 aattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagc 34560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 49187 - 49255
Alignment:
Q  192 taaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 260  Q
    ||||||||| |  |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  49187 taaggacctccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcg 49255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 335
Target Start/End: Original strand, 40667 - 40700
Alignment:
Q  302 caaatgagcacccatccacggcacgaatcttgtt 335  Q
    ||||||||||||||||||||| ||||||||||||    
T  40667 caaatgagcacccatccacgggacgaatcttgtt 40700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Original strand, 49141 - 49173
Alignment:
Q  302 caaatgagcacccatccacggcacgaatcttgt 334  Q
    ||||||||||||||||||||| |||||||||||    
T  49141 caaatgagcacccatccacgggacgaatcttgt 49173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Original strand, 95739 - 95771
Alignment:
Q  302 caaatgagcacccatccacggcacgaatcttgt 334  Q
    ||||||||||||||||||||| |||||||||||    
T  95739 caaatgagcacccatccacgggacgaatcttgt 95771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 18926213 - 18926332
Alignment:
Q  10 tcaccatttattggcaatggcgatatcgtgatgaggattctatggaagataactcgtcagaaacaaagagtgaagggttgccatctttaccgccccattt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18926213 tcaccatttattggcaatggcgatatcgtgatgaggattctatggaagataactcgtcagaaacaaagagtgaagggttgccatctttaccgccccattt 18926312  T
Q  110 gtgccgctactttacaattg 129  Q
    ||||||||||||||||||||    
T  18926313 gtgccgctactttacaattg 18926332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 146 - 279
Target Start/End: Complemental strand, 10753 - 10620
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||  |||||| ||||||| ||||||| ||    
T  10753 gggacaaatcttgttcctcaaaaattcaggcatgtttgggacatcataaggacctccaccgagaaattttggcgtttttgctcgcgggattcgttaagtg 10654  T
Q  246 cgaatattttaagcgccagaaagtcaagaaagcg 279  Q
    |||||||||||||||||| |||||||||||||||    
T  10653 cgaatattttaagcgccaaaaagtcaagaaagcg 10620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 152 - 260
Target Start/End: Complemental strand, 11792 - 11684
Alignment:
Q  152 aatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaata 251  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||| | |||||||| |||| ||||| | ||||||||    
T  11792 aatcttgtcccccaaaaatttaggcatgtttgggacatcataaggacctccaccgagaaattttggcgaatttgcacgtgggattcgtttattgcgaata 11693  T
Q  252 ttttaagcg 260  Q
    |||||||||    
T  11692 ttttaagcg 11684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 94; Significance: 8e-46; HSPs: 6)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 146 - 279
Target Start/End: Complemental strand, 37149 - 37016
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||  |||||| ||||||| ||||||| ||    
T  37149 gggacaaatcttgttcctcaaaaattcaggcatgtttgggacatcataaggacctccaccgagaaattttggcgtttttgctcgcgggattcgttaagtg 37050  T
Q  246 cgaatattttaagcgccagaaagtcaagaaagcg 279  Q
    |||||||||||||||||| |||||||||||||||    
T  37049 cgaatattttaagcgccaaaaagtcaagaaagcg 37016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 146 - 279
Target Start/End: Complemental strand, 18321 - 18188
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||  |||||| | ||||| ||||||| ||    
T  18321 gggacaaatcttgttcctcaaaaattcaggcatgtttgggacatcataaggacctccaccgagaaattttggcgtttttgctcacgggattcgttaagtg 18222  T
Q  246 cgaatattttaagcgccagaaagtcaagaaagcg 279  Q
    |||||||||||||||||| ||||| |||||||||    
T  18221 cgaatattttaagcgccaaaaagtaaagaaagcg 18188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 166 - 279
Target Start/End: Complemental strand, 28353 - 28240
Alignment:
Q  166 aaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccaga 265  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||  |||||| ||||||| ||||||| |||||||||||||||||||| |    
T  28353 aaaattcaggcatgtttgggacatcataaggacctccaccgagaaattttggcgtttttgctcgcgggattcgttaagtgcgaatattttaagcgccaaa 28254  T
Q  266 aagtcaagaaagcg 279  Q
    ||||||||||||||    
T  28253 aagtcaagaaagcg 28240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 152 - 260
Target Start/End: Complemental strand, 19362 - 19254
Alignment:
Q  152 aatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaata 251  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||| | |||||||| |||| ||||| | ||||||||    
T  19362 aatcttgtcccccaaaaatttaggcatgtttgggacatcataaggacctccaccgagaaattttggcgaatttgcacgtgggattcgtttattgcgaata 19263  T
Q  252 ttttaagcg 260  Q
    |||||||||    
T  19262 ttttaagcg 19254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 152 - 260
Target Start/End: Original strand, 33350 - 33458
Alignment:
Q  152 aatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaata 251  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||| | |||||||| |||| ||||| | ||||||||    
T  33350 aatcttgtcccccaaaaatttaggcatgtttgggacatcataaggacctccaccgagaaattttggcgaatttgcacgtgggattcgtttattgcgaata 33449  T
Q  252 ttttaagcg 260  Q
    |||||||||    
T  33450 ttttaagcg 33458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 152 - 260
Target Start/End: Complemental strand, 38188 - 38080
Alignment:
Q  152 aatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaata 251  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||| | |||||||| |||| ||||| | ||||||||    
T  38188 aatcttgtcccccaaaaatttaggcatgtttgggacatcataaggacctccaccgagaaattttggcgaatttgcacgtgggattcgtttattgcgaata 38089  T
Q  252 ttttaagcg 260  Q
    |||||||||    
T  38088 ttttaagcg 38080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1084 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold1084
Description:

Target: scaffold1084; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 155 - 269
Target Start/End: Complemental strand, 2984 - 2870
Alignment:
Q  155 cttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattt 254  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||| ||||| ||||||||    
T  2984 cttgttccccaaaaattcaggcgtgtttgggacatcataaggaccttcaccgagaaattttggcaattttgcaggcggaaatcgtcaactgtgaatattt 2885  T
Q  255 taagcgccagaaagt 269  Q
    |||||||||||||||    
T  2884 taagcgccagaaagt 2870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 146 - 260
Target Start/End: Original strand, 21098470 - 21098584
Alignment:
Q  146 gggacgaatcttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactg 245  Q
    ||||| ||| |||||  |||| |||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||| | | || || |||| |     
T  21098470 gggacaaattttgttaaccaataattcaggcatgtttgagacatcataaggacctccaccgagaaattttggcaattttgcatgagagattcattaatta 21098569  T
Q  246 cgaatattttaagcg 260  Q
    |||||||||||||||    
T  21098570 cgaatattttaagcg 21098584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 260
Target Start/End: Original strand, 9477426 - 9477530
Alignment:
Q  156 ttgttccccaaaaattcaggcatgtttgggacatcataaggaccttccccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatatttt 255  Q
    |||||||||||| ||| |||||||||| |||||||||||||| || |  ||||||| ||||||| ||||||||| ||||   ||||| | ||||||||||    
T  9477426 ttgttccccaaatattgaggcatgtttaggacatcataaggatctccatcgagaaactttggcatttttgcacgagggatgagttaattacgaatatttt 9477525  T
Q  256 aagcg 260  Q
    |||||    
T  9477526 aagcg 9477530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 4661365 - 4661327
Alignment:
Q  91 catctttaccgccccatttgtgccgctactttacaattg 129  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  4661365 catctttgccgccccatttgtgccgctactttacaattg 4661327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 31106806 - 31106850
Alignment:
Q  156 ttgttccccaaaaattcaggcatgtttgggacatcataaggacct 200  Q
    |||||| ||||| || ||||||||||| |||||||||||||||||    
T  31106806 ttgttctccaaacatgcaggcatgtttaggacatcataaggacct 31106850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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