View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk366-LTR4-TNT-insertion-8 (Length: 155)
Name: Tnk366-LTR4-TNT-insertion-8
Description: Tnk366-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk366-LTR4-TNT-insertion-8 |
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Alignment Details
Target: chr5 (Bit Score: 105; Significance: 9e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 9e-53
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 20747233 - 20747129
Alignment:
| Q |
8 |
ttcaatacaaaataataaacaatatatcaaacatgtagaggaaatacttacttttatataaacaactttgtagtcaatttcaaaatgaactccctaaatc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20747233 |
ttcaatacaaaataataaacaatatatcaaacatgtagaggaaatacttacttttatataaacaactttgtagtcaatttcaaaatgaactccctaaatc |
20747134 |
T |
|
| Q |
108 |
tggca |
112 |
Q |
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||||| |
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| T |
20747133 |
tggca |
20747129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 9e-19
Query Start/End: Original strand, 108 - 155
Target Start/End: Complemental strand, 22206044 - 22205997
Alignment:
| Q |
108 |
tggcagagggatagttgatcacacccttcaaatgataaagaaattaaa |
155 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22206044 |
tggcagagggatagttgatcacacccttcaaatgataaagaaattaaa |
22205997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 1e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 28703065 - 28703166
Alignment:
| Q |
11 |
aatacaaaataataaacaatatatcaaacatgtagaggaaatacttacttttatataaacaactttgtagtcaatttcaaaatgaactccctaaatctgg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28703065 |
aatacaaaataataaacaatatatcaaacatgtagaggaaatacttacttttatataaacaactttgtggtcaatttcaaaatgaactccctaaatctgg |
28703164 |
T |
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| Q |
111 |
ca |
112 |
Q |
| |
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|| |
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|
| T |
28703165 |
ca |
28703166 |
T |
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