View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk366-LTR4-TNT-insertion-9 (Length: 122)
Name: Tnk366-LTR4-TNT-insertion-9
Description: Tnk366-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk366-LTR4-TNT-insertion-9 |
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Alignment Details
Target: chr3 (Bit Score: 93; Significance: 1e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 38214871 - 38214771
Alignment:
| Q |
8 |
ctaacttggggtgaccaccgtgctaagatattcaatggtggtcaacttctatctctttctcttgataaaacctctggctctggctttcaatccaagaaag |
107 |
Q |
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| T |
38214871 |
ctaacttggggtgaccaccgtgctaagatattcaatggtggtcaacttctatctctttctcttgataaaacttctggctctggcttccaatccaagaaag |
38214772 |
T |
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| Q |
108 |
a |
108 |
Q |
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| T |
38214771 |
a |
38214771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 38219092 - 38218992
Alignment:
| Q |
8 |
ctaacttggggtgaccaccgtgctaagatattcaatggtggtcaacttctatctctttctcttgataaaacctctggctctggctttcaatccaagaaag |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
38219092 |
ctaacttggggtgaccaccgtgctaagatattcaatggtggtcaacttctatctctttctcttgataaaacttctggctctggcttccaatccaagaaag |
38218993 |
T |
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| Q |
108 |
a |
108 |
Q |
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| T |
38218992 |
a |
38218992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 35016264 - 35016349
Alignment:
| Q |
8 |
ctaacttggggtgaccaccgtgctaagatattcaatggtggtcaacttctatctctttctcttgataaaacctctggctctggctt |
93 |
Q |
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| T |
35016264 |
ctaacatggggtgataaccgtgctaagatattcaatggtggtcaacttctatcactttcccttgacaaagtctctggctctggctt |
35016349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 42990671 - 42990771
Alignment:
| Q |
8 |
ctaacttggggtgaccaccgtgctaagatattcaatggtggtcaacttctatctctttctcttgataaaacctctggctctggctttcaatccaagaaag |
107 |
Q |
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| T |
42990671 |
ctaacatggggcgatcaccgtgctaagacattcaacggtggtcagcttctttcactttctctcgacaaagtctccggctctggcttccagtccaagaaag |
42990770 |
T |
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| Q |
108 |
a |
108 |
Q |
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| T |
42990771 |
a |
42990771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 53489692 - 53489636
Alignment:
| Q |
46 |
tggtcaacttctatctctttctcttgataaaacctctggctctggctttcaatccaa |
102 |
Q |
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| T |
53489692 |
tggtcagcttcttactctgtctctagatagaacctctggctctggctttcaatccaa |
53489636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 53492349 - 53492425
Alignment:
| Q |
26 |
cgtgctaagatattcaatggtggtcaacttctatctctttctcttgataaaacctctggctctggctttcaatccaa |
102 |
Q |
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|||||||| ||| |||| |||| |||||||| |||| ||||||||||| ||||||| || |||||||||||||| |
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| T |
53492349 |
cgtgctaaaatactcaacagtggccaacttcttactctatctcttgataagtcctctggttcaggctttcaatccaa |
53492425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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