View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Tnk367-LTR4-TNT-insertion-1 (Length: 399)

Name: Tnk367-LTR4-TNT-insertion-1
Description: Tnk367-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Tnk367-LTR4-TNT-insertion-1
Tnk367-LTR4-TNT-insertion-1
[»] chr4 (11 HSPs)
chr4 (131-364)||(29432485-29432718)
chr4 (26-89)||(29431842-29431905)
chr4 (158-262)||(29464601-29464705)
chr4 (26-115)||(27574588-27574673)
chr4 (78-116)||(29431917-29431955)
chr4 (47-82)||(6942258-6942293)
chr4 (48-82)||(19594461-19594495)
chr4 (47-80)||(17354520-17354553)
chr4 (48-80)||(33977809-33977841)
chr4 (40-80)||(40293608-40293648)
chr4 (26-82)||(48818471-48818527)
[»] chr7 (5 HSPs)
chr7 (26-82)||(23031761-23031817)
chr7 (40-80)||(32650091-32650131)
chr7 (29-82)||(42934136-42934189)
chr7 (26-80)||(44599400-44599454)
chr7 (26-82)||(2457943-2457999)
[»] chr3 (6 HSPs)
chr3 (26-80)||(47068916-47068970)
chr3 (27-82)||(33640973-33641028)
chr3 (26-82)||(33967969-33968025)
chr3 (42-80)||(12790099-12790137)
chr3 (26-80)||(50164030-50164084)
chr3 (26-82)||(34819766-34819822)
[»] chr1 (9 HSPs)
chr1 (26-80)||(21008215-21008269)
chr1 (36-80)||(10987230-10987274)
chr1 (26-115)||(35652483-35652568)
chr1 (50-80)||(47446018-47446048)
chr1 (26-80)||(47950021-47950075)
chr1 (27-80)||(36438405-36438458)
chr1 (29-82)||(46288824-46288877)
chr1 (40-80)||(18033670-18033710)
chr1 (40-80)||(30322002-30322042)
[»] chr8 (6 HSPs)
chr8 (36-82)||(404411-404456)
chr8 (27-80)||(12892623-12892676)
chr8 (40-80)||(33274299-33274339)
chr8 (29-76)||(18310527-18310574)
chr8 (26-76)||(23736954-23737004)
chr8 (26-80)||(40330170-40330224)
[»] chr5 (6 HSPs)
chr5 (26-80)||(3494522-3494576)
chr5 (40-82)||(12517135-12517177)
chr5 (48-82)||(17904347-17904381)
chr5 (41-82)||(35470107-35470148)
chr5 (39-79)||(2769894-2769934)
chr5 (40-80)||(41174177-41174217)
[»] chr2 (3 HSPs)
chr2 (26-78)||(33440860-33440912)
chr2 (47-82)||(43592735-43592770)
chr2 (40-78)||(39958871-39958909)
[»] chr6 (1 HSPs)
chr6 (47-82)||(32604552-32604587)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 131 - 364
Target Start/End: Original strand, 29432485 - 29432718
Alignment:
Q  131 gaattttaaacgtctcaatgttattgttgttgcaggtagacttcccaaaaatgtggtgatgacgggaaatgttcttctcaatgggaagnnnnnnnttccg 230  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||       |||||    
T  29432485 gaattttaaacgtctcaatgttattgtcgttgcaggtagacttccaaaaaatgtggtgatgacgggaaatgttcttctcaatgggaagaaaaaaattccg 29432584  T
Q  231 gactatggttttgttgtaagtacactaacacaaacccttacttttgtagaggactttcaactgaaatttgtgctttaacagaatttgttttaagcaccaa 330  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29432585 gactatggttttgttgtaagtacactaacacaaaaccttacttttgtagaggactttcaactgaaatttgtgctttaacagaatttgttttaagcaccaa 29432684  T
Q  331 tttcgagaactaatttgtatattacttgtttaaa 364  Q
    |||||||||||||||||||||||||| |||||||    
T  29432685 tttcgagaactaatttgtatattactcgtttaaa 29432718  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 29431842 - 29431905
Alignment:
Q  26 gtgcattcacaactttaaaaacttaaaaatttatcttttcaatacaatatttattgtgcattta 89  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  29431842 gtgcattcacaactttaaaaacttaaaaatttatcatttcaatacaatatttattgttcattta 29431905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 158 - 262
Target Start/End: Original strand, 29464601 - 29464705
Alignment:
Q  158 tgttgcaggtagacttcccaaaaatgtggtgatgacgggaaatgttcttctcaatgggaagnnnnnnnttccggactatggttttgttgtaagtacacta 257  Q
    |||||||||||||||| | ||||||||||| ||||| ||||||||| ||||||||||||||        ||| | |||||||||||||||||||||||||    
T  29464601 tgttgcaggtagacttgcaaaaaatgtggtaatgacaggaaatgtttttctcaatgggaagaaaaaaactccaggctatggttttgttgtaagtacacta 29464700  T
Q  258 acaca 262  Q
    |||||    
T  29464701 acaca 29464705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 27574673 - 27574588
Alignment:
Q  26 gtgcattcacaactttaaaaacttaaaaatttatcttttcaatacaatatttattgtgcatttaatacaactttaagatcattatcttgt 115  Q
    ||||||||| |||||||||| ||||||| |||||||||||||| |||||||||||    ||||||| | | ||||||||| |||||||||    
T  27574673 gtgcattcataactttaaaatcttaaaattttatcttttcaattcaatatttatt----atttaattctattttaagatctttatcttgt 27574588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 29431917 - 29431955
Alignment:
Q  78 attgtgcatttaatacaactttaagatcattatcttgtt 116  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  29431917 attgtgcatttaatacaactttaagattattatcttgtt 29431955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 6942258 - 6942293
Alignment:
Q  47 cttaaaaatttatcttttcaatacaatatttattgt 82  Q
    |||||||| |||||||||||||||||||||||||||    
T  6942258 cttaaaaacttatcttttcaatacaatatttattgt 6942293  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 82
Target Start/End: Original strand, 19594461 - 19594495
Alignment:
Q  48 ttaaaaatttatcttttcaatacaatatttattgt 82  Q
    ||||||| |||||||||||||||||||||||||||    
T  19594461 ttaaaaacttatcttttcaatacaatatttattgt 19594495  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 17354553 - 17354520
Alignment:
Q  47 cttaaaaatttatcttttcaatacaatatttatt 80  Q
    |||||||| |||||||||||||||||||||||||    
T  17354553 cttaaaaacttatcttttcaatacaatatttatt 17354520  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 33977809 - 33977841
Alignment:
Q  48 ttaaaaatttatcttttcaatacaatatttatt 80  Q
    ||||||||||||||||||||| |||||||||||    
T  33977809 ttaaaaatttatcttttcaatgcaatatttatt 33977841  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 40293648 - 40293608
Alignment:
Q  40 ttaaaaacttaaaaatttatcttttcaatacaatatttatt 80  Q
    |||||| |||||||||||||||||||||  |||||||||||    
T  40293648 ttaaaatcttaaaaatttatcttttcaacgcaatatttatt 40293608  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 48818471 - 48818527
Alignment:
Q  26 gtgcattcacaactttaaaaacttaaaaatttatcttttcaatacaatatttattgt 82  Q
    ||||||||| ||| ||||||  ||||||| ||||||||||||| || ||||||||||    
T  48818471 gtgcattcataacattaaaagtttaaaaacttatcttttcaatgcattatttattgt 48818527  T

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Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 23031761 - 23031817
Alignment:
Q  26 gtgcattcacaactttaaaaacttaaaaatttatcttttcaatacaatatttattgt 82  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  23031761 gtgcattcacaaccttaaaaacttaaaaatttatctttttaatacaatatttattgt 23031817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 32650131 - 32650091
Alignment:
Q  40 ttaaaaacttaaaaatttatcttttcaatacaatatttatt 80  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  32650131 ttaaaaacttaaaaatttatcttttcaatacaacatttatt 32650091  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 42934189 - 42934136
Alignment:
Q  29 cattcacaactttaaaaacttaaaaatttatcttttcaatacaatatttattgt 82  Q
    |||||| ||| ||||||||||||||| |||| |||| |||||||||||||||||    
T  42934189 cattcataacattaaaaacttaaaaagttatttttttaatacaatatttattgt 42934136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 44599454 - 44599400
Alignment:
Q  26 gtgcattcacaactttaaaaacttaaaaatttatcttttcaatacaatatttatt 80  Q
    ||||||| | ||| |||||| |||||||| |||| ||||||||||||||||||||    
T  44599454 gtgcatttataaccttaaaatcttaaaaacttatattttcaatacaatatttatt 44599400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 2457943 - 2457999
Alignment:
Q  26 gtgcattcacaactttaaaaacttaaaaatttatcttttcaatacaatatttattgt 82  Q
    ||||||||| ||| |||||| ||||| |  ||||||||||||||||||||| |||||    
T  2457943 gtgcattcataaccttaaaagcttaagagcttatcttttcaatacaatattgattgt 2457999  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 47068970 - 47068916
Alignment:
Q  26 gtgcattcacaactttaaaaacttaaaaatttatcttttcaatacaatatttatt 80  Q
    ||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||    
T  47068970 gtgcattcataactttaaaaacttaaaaaattatctttttaatacaatatttatt 47068916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 33640973 - 33641028
Alignment:
Q  27 tgcattcacaactttaaaaacttaaaaatttatcttttcaatacaatatttattgt 82  Q
    |||||||| |||||||||| |||||||| |||| ||||||||||||||||||||||    
T  33640973 tgcattcataactttaaaatcttaaaaacttatattttcaatacaatatttattgt 33641028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 33968025 - 33967969
Alignment:
Q  26 gtgcattcacaactttaaaaacttaaaaatttatcttttcaatacaatatttattgt 82  Q
    ||||||||| ||| ||||||||||||||| |||| |||| |||||||||||||||||    
T  33968025 gtgcattcataaccttaaaaacttaaaaagttatatttttaatacaatatttattgt 33967969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 12790099 - 12790137
Alignment:
Q  42 aaaaacttaaaaatttatcttttcaatacaatatttatt 80  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  12790099 aaaatcttaaaaatttatcttttcaatacaatatttatt 12790137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 50164030 - 50164084
Alignment:
Q  26 gtgcattcacaactttaaaaacttaaaaatttatcttttcaatacaatatttatt 80  Q
    ||||||||| || || |||||||||||| |||||||||||||||||| |||||||    
T  50164030 gtgcattcataatttgaaaaacttaaaagtttatcttttcaatacaacatttatt 50164084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 34819822 - 34819766
Alignment:
Q  26 gtgcattcacaactttaaaaacttaaaaatttatcttttcaatacaatatttattgt 82  Q
    ||||||||| ||| ||||||  | |||||||||||||||||||||||| ||||||||    
T  34819822 gtgcattcataaccttaaaagttaaaaaatttatcttttcaatacaatttttattgt 34819766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 21008215 - 21008269
Alignment:
Q  26 gtgcattcacaactttaaaaacttaaaaatttatcttttcaatacaatatttatt 80  Q
    |||||||||  || ||||||||||||||| |||||||||||||||||||||||||    
T  21008215 gtgcattcaataccttaaaaacttaaaaagttatcttttcaatacaatatttatt 21008269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 10987274 - 10987230
Alignment:
Q  36 aactttaaaaacttaaaaatttatcttttcaatacaatatttatt 80  Q
    |||||||||| |||||||| ||||||||||||| |||||||||||    
T  10987274 aactttaaaatcttaaaaacttatcttttcaatgcaatatttatt 10987230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 35652568 - 35652483
Alignment:
Q  26 gtgcattcacaactttaaaaacttaaaaatttatcttttcaatacaatatttattgtgcatttaatacaactttaagatcattatcttgt 115  Q
    ||||||||  ||| |||| |||||||||| ||||||||||||| |||||||||||    |||||||  || ||||||||| |||||||||    
T  35652568 gtgcattctaaaccttaacaacttaaaaacttatcttttcaatgcaatatttatt----atttaatttaattttaagatctttatcttgt 35652483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 80
Target Start/End: Original strand, 47446018 - 47446048
Alignment:
Q  50 aaaaatttatcttttcaatacaatatttatt 80  Q
    |||||||||||||||||||||||||||||||    
T  47446018 aaaaatttatcttttcaatacaatatttatt 47446048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 47950075 - 47950021
Alignment:
Q  26 gtgcattcacaactttaaaaacttaaaaatttatcttttcaatacaatatttatt 80  Q
    ||||||||| ||| |||||| |||||||| || |||||||||| |||||||||||    
T  47950075 gtgcattcataaccttaaaagcttaaaaacttgtcttttcaatgcaatatttatt 47950021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 36438405 - 36438458
Alignment:
Q  27 tgcattcacaactttaaaaacttaaaaatttatcttttcaatacaatatttatt 80  Q
    |||||||| ||| |||||||||| |||| |||| |||||||| |||||||||||    
T  36438405 tgcattcataaccttaaaaacttcaaaacttatattttcaatgcaatatttatt 36438458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 46288877 - 46288824
Alignment:
Q  29 cattcacaactttaaaaacttaaaaatttatcttttcaatacaatatttattgt 82  Q
    |||||| ||| ||||||||||||||| |||| || |||||| ||||||||||||    
T  46288877 cattcataaccttaaaaacttaaaaacttattttatcaatataatatttattgt 46288824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 18033710 - 18033670
Alignment:
Q  40 ttaaaaacttaaaaatttatcttttcaatacaatatttatt 80  Q
    ||||||||||||||||||||||||| ||| ||| |||||||    
T  18033710 ttaaaaacttaaaaatttatctttttaatgcaacatttatt 18033670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 30322002 - 30322042
Alignment:
Q  40 ttaaaaacttaaaaatttatcttttcaatacaatatttatt 80  Q
    |||||| |||||||| ||||||||||||| |||||||||||    
T  30322002 ttaaaatcttaaaaacttatcttttcaatgcaatatttatt 30322042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 404411 - 404456
Alignment:
Q  36 aactttaaaaacttaaaaatttatcttttcaatacaatatttattgt 82  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||    
T  404411 aactgtaaaaacttaaaaatttatc-tttcaatacaatatttattgt 404456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 12892623 - 12892676
Alignment:
Q  27 tgcattcacaactttaaaaacttaaaaatttatcttttcaatacaatatttatt 80  Q
    |||||||| ||| ||||||||||||||| |||| ||||||||| ||||||||||    
T  12892623 tgcattcataaccttaaaaacttaaaaacttatattttcaatataatatttatt 12892676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 33274299 - 33274339
Alignment:
Q  40 ttaaaaacttaaaaatttatcttttcaatacaatatttatt 80  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  33274299 ttaaaatcttaaaaatttatcttttcaatgcaatatttatt 33274339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 18310527 - 18310574
Alignment:
Q  29 cattcacaactttaaaaacttaaaaatttatcttttcaatacaatatt 76  Q
    |||||| ||||||||||  ||||||| |||||||||||||||||||||    
T  18310527 cattcataactttaaaagattaaaaacttatcttttcaatacaatatt 18310574  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 23736954 - 23737004
Alignment:
Q  26 gtgcattcacaactttaaaaacttaaaaatttatcttttcaatacaatatt 76  Q
    ||||||||| ||||||||||  ||||||| |||||||||||||| ||||||    
T  23736954 gtgcattcataactttaaaagattaaaaacttatcttttcaatataatatt 23737004  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 40330224 - 40330170
Alignment:
Q  26 gtgcattcacaactttaaaaacttaaaaatttatcttttcaatacaatatttatt 80  Q
    ||||||||| ||  ||||||| ||||||| |||| ||||||||||||||||||||    
T  40330224 gtgcattcataatcttaaaaatttaaaaacttatattttcaatacaatatttatt 40330170  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 3494576 - 3494522
Alignment:
Q  26 gtgcattcacaactttaaaaacttaaaaatttatcttttcaatacaatatttatt 80  Q
    ||||||||| ||  ||||||||||||||||||||||||| ||||||| |||||||    
T  3494576 gtgcattcataatcttaaaaacttaaaaatttatctttttaatacaacatttatt 3494522  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 12517135 - 12517177
Alignment:
Q  40 ttaaaaacttaaaaatttatcttttcaatacaatatttattgt 82  Q
    |||||| ||||||||||||| ||||||||| ||||||||||||    
T  12517135 ttaaaagcttaaaaatttatattttcaataaaatatttattgt 12517177  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 82
Target Start/End: Complemental strand, 17904381 - 17904347
Alignment:
Q  48 ttaaaaatttatcttttcaatacaatatttattgt 82  Q
    |||||||||||||||||||||||||| ||||||||    
T  17904381 ttaaaaatttatcttttcaatacaatttttattgt 17904347  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 35470148 - 35470107
Alignment:
Q  41 taaaaacttaaaaatttatcttttcaatacaatatttattgt 82  Q
    ||||| ||||| |||||||||||||||||||||| |||||||    
T  35470148 taaaagcttaataatttatcttttcaatacaatacttattgt 35470107  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 2769894 - 2769934
Alignment:
Q  39 tttaaaaacttaaaaatttatcttttcaatacaatatttat 79  Q
    |||||||| ||||| ||||||||||||||||||| ||||||    
T  2769894 tttaaaaatttaaatatttatcttttcaatacaaaatttat 2769934  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 41174177 - 41174217
Alignment:
Q  40 ttaaaaacttaaaaatttatcttttcaatacaatatttatt 80  Q
    |||||| |||||||| |||| ||||||||||||||||||||    
T  41174177 ttaaaatcttaaaaacttattttttcaatacaatatttatt 41174217  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 33440860 - 33440912
Alignment:
Q  26 gtgcattcacaactttaaaaacttaaaaatttatcttttcaatacaatattta 78  Q
    ||||||| | ||| |||||| |||||||| |||||||||||||||||||||||    
T  33440860 gtgcatttataaccttaaaatcttaaaaacttatcttttcaatacaatattta 33440912  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 43592735 - 43592770
Alignment:
Q  47 cttaaaaatttatcttttcaatacaatatttattgt 82  Q
    |||||||| |||||||||||||||||||||||||||    
T  43592735 cttaaaaacttatcttttcaatacaatatttattgt 43592770  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 39958871 - 39958909
Alignment:
Q  40 ttaaaaacttaaaaatttatcttttcaatacaatattta 78  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  39958871 ttaaaagcttaaaaatatatcttttcaatacaatattta 39958909  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 32604552 - 32604587
Alignment:
Q  47 cttaaaaatttatcttttcaatacaatatttattgt 82  Q
    ||||||||||||| ||||||||||||||||||||||    
T  32604552 cttaaaaatttatattttcaatacaatatttattgt 32604587  T

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