View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Tnk367-LTR4-TNT-insertion-5 (Length: 796)
Name: Tnk367-LTR4-TNT-insertion-5
Description: Tnk367-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk367-LTR4-TNT-insertion-5 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 683; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 683; E-Value: 0
Query Start/End: Original strand, 8 - 792
Target Start/End: Original strand, 29552819 - 29553602
Alignment:
| Q |
8 |
cagttctttccataccacctgttgctgcaagcatcctacttcgtcattataattggaatgtcagtaatgttaatgaagcttggtttgctgatgaagacgg |
107 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29552819 |
cagttctttccataccaccagttgctgcaagcatcctacttcgtcattataattggaatgtcagtaatgttaatgaagcttggtttgctgatgaagacgg |
29552918 |
T |
|
| Q |
108 |
agtccgaagaaaagttggtttgttggagaagccggtttgtgagaatcatgatgctaaaacgcttacttgcggcatctgttttgaaacttatggtcgttct |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
29552919 |
agtccgaagaaaagttggtttgttggagaagccggtttgtgagaatcatgatgctaaaaagcttacttgcggcatctgttttgaagcttatcgtctttct |
29553018 |
T |
|
| Q |
208 |
aagattcacactgcttcttgcggtcatccgtactgtttttcatgctggagaggatatattggcacctcaatcaacgatggtccgggatgcttgatgctga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29553019 |
aagattcacactgcttcttgcggtcatccgtactgtttttcatgctggagaggatatattggcacctcaatcaacgatggtccgggatgcttgatgctga |
29553118 |
T |
|
| Q |
308 |
gatgtcctgatcccgcttgtggtgctgctgttgatcaagatacgattaggtacgcagcatctgctgaagataaggagaagtatgatcgttatcttgttag |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29553119 |
gatgtcctgatcccgcttgtggtgctgctgttgatcaagatacaattaatcttttagcatctgctgaagataaggagaagtatgatcgttatcttgttag |
29553218 |
T |
|
| Q |
408 |
atcttacattgaaaacaataaaaaggtatgtcgtaaagattcactttagacattgataatgata-taacaaatataaacttttatgtagtgtgcaatctg |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
29553219 |
atcttacattgaaaacaataaaaaggtatgtcgtaaagattcaacttagacattgataatgatagtaacagatataaatttttatgtagtgtgcaatctg |
29553318 |
T |
|
| Q |
507 |
tgtataatctatatgttggctttctttttgggatgcattcatgataattctttttggtatgcattcatgataactctttgcgttatctttgttttgttta |
606 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
29553319 |
tgtataatctatatgttggctttttttttggtatgcattcatgataatt--ttttggtatgcattcatgataattctttgcgttatctttgttttgtgta |
29553416 |
T |
|
| Q |
607 |
gaccaagtggtgtcctgctcctggttgtgaacatgcagttaattttgatgctggtggtgaaaattatgacgtatcttgcctctgttcatatagcttttgc |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29553417 |
gaccaagtggtgtcctgctcctggttgtgaacatgcagttaattttgatgctggtggtgaaaattatgacgtatcttgcctctgttcatatagcttttgc |
29553516 |
T |
|
| Q |
707 |
tggaattgcactgaagatgctcaccgtccagtggattgcgacacagtgtcgaagtggattttgaaaaacagtgcagaatctgaaaa |
792 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29553517 |
tggaattgcactgaagatgctcaccgtccagtggattgcgacacagtgtcgaagtggattttgaaaaacagtgcagaatctgaaaa |
29553602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 8 - 559
Target Start/End: Original strand, 29537689 - 29538252
Alignment:
| Q |
8 |
cagttctttccataccacctgttgctgcaagcatcctacttcgtcattataattggaatgtcagtaatgttaatgaagcttggtttgctgatgaagacgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29537689 |
cagttctttccataccacctgttgctgcaagcatcctacttcgtcattataattggaatgtcagtaatgttaatgaagcttggtttgctgatgaagacgg |
29537788 |
T |
|
| Q |
108 |
agtccgaagaaaagttggtttgttggagaagccggtttgtgagaatcatgatgctaaaac---------gcttacttgcggcatctgttttgaaacttat |
198 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | || | |||||| ||||||||| | ||||||||||||||||||||||||| ||||| |
|
|
| T |
29537789 |
agtccgaagaaaagttggcttgttggagaagccagcttataagaatcctgatgctaacaaaatgcctaagcttacttgcggcatctgttttgaagcttat |
29537888 |
T |
|
| Q |
199 |
ggtcgttctaagattcacactgcttcttgcggtcatccgtactgtttttcatgctggagaggatatattggcacctcaatcaacgatggtccgggatgct |
298 |
Q |
| |
|
||| |||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
29537889 |
cgtccttctaagattcacactgcttcttgtggtcatccgtactgttcttcatgctggggaggatatattggcacttcaatcaacgatggtctgggatgct |
29537988 |
T |
|
| Q |
299 |
tgatgctgagatgtcctgatcccgcttgtggtgctgctgttgatcaagatacgattaggtacgca---gcatctgctgaagataaggagaagtatgatcg |
395 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||| ||||||||||||| |||| | ||| ||||||||||||||||| |||||||||| || |
|
|
| T |
29537989 |
tgatgctgagatgtcctgatcccgcctgtgctgctgccgttgatcaagatatgatt---gatgcatttgcatctgctgaagataaaaagaagtatgaacg |
29538085 |
T |
|
| Q |
396 |
ttatcttgttagatcttacattgaaaacaataaaaaggtatgtcgtaaagattcactttagacattgataa-tgatataacaa--atataaacttttatg |
492 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||||||| || || ||||||| ||||||||| |||| ||| | | || ||||| ||||||||| |
|
|
| T |
29538086 |
ttaccttgttagatcttacattgaagtcaataaaaaggtatatcttagagattcaacttagacattaataattgacaaactaattatatatacttttatg |
29538185 |
T |
|
| Q |
493 |
tagtgtgcaatctgtgtataatctatatgttggctttctttttgggatgcattcatgataattcttt |
559 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29538186 |
tagtgtgcaatctgtgtataatctatatgttggctttctttttggtatgcattcatgataattcttt |
29538252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 594 - 796
Target Start/End: Original strand, 29538544 - 29538746
Alignment:
| Q |
594 |
tttgttttgtttagaccaagtggtgtcctgctcctggttgtgaacatgcagttaattttgatgctggtggtgaaaattatgacgtatcttgcctctgttc |
693 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29538544 |
tttgttttgtttagaccaagtggtgtcctgctcctggttgtgaacatgcagttaattttgatgctggtgatgaaaattatgacgtatcttgcctctgttc |
29538643 |
T |
|
| Q |
694 |
atatagcttttgctggaattgcactgaagatgctcaccgtccagtggattgcgacacagtgtcgaagtggattttgaaaaacagtgcagaatctgaaaac |
793 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29538644 |
atatagcttttgctggaattgcactgaagatgctcaccgtccagtggattgcgacacagtgtcgaagtggattttgaaaaacagtgcagaatctgaaaac |
29538743 |
T |
|
| Q |
794 |
acg |
796 |
Q |
| |
|
||| |
|
|
| T |
29538744 |
acg |
29538746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 590 - 628
Target Start/End: Original strand, 29538486 - 29538524
Alignment:
| Q |
590 |
tatctttgttttgtttagaccaagtggtgtcctgctcct |
628 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29538486 |
tatctttgttttgtttagaccaagtggtgtcctgctcct |
29538524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 554 - 589
Target Start/End: Original strand, 29538221 - 29538256
Alignment:
| Q |
554 |
ttctttttggtatgcattcatgataactctttgcgt |
589 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29538221 |
ttctttttggtatgcattcatgataattctttgcgt |
29538256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 177; Significance: 5e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 592 - 796
Target Start/End: Complemental strand, 42781318 - 42781114
Alignment:
| Q |
592 |
tctttgttttgtttagaccaagtggtgtcctgctcctggttgtgaacatgcagttaattttgatgctggtggtgaaaattatgacgtatcttgcctctgt |
691 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42781318 |
tctttgttttgcttagaccaagtggtgtcctgctcctggttgtgaacatgcggttaattttgttgctggtggtgaaaattatgacgtatcttgcctctgt |
42781219 |
T |
|
| Q |
692 |
tcatatagcttttgctggaattgcactgaagatgctcaccgtccagtggattgcgacacagtgtcgaagtggattttgaaaaacagtgcagaatctgaaa |
791 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
42781218 |
tcatatagcttttgctggaattgcactgaagatgctcaccgtccagtggattgtggcacagtgtcgaagtggattttgaaaaacagttcagaatccgaaa |
42781119 |
T |
|
| Q |
792 |
acacg |
796 |
Q |
| |
|
||||| |
|
|
| T |
42781118 |
acacg |
42781114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 173; Significance: 1e-92; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 258 - 559
Target Start/End: Original strand, 42189222 - 42189525
Alignment:
| Q |
258 |
aggatatattggcacctcaatcaacgatggtccgggatgcttgatgctgagatgtcctgatcccgcttgtggtgctgctgttgatcaagatacgattagg |
357 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
42189222 |
aggatatattggcacttcaattaacgatggtcctggatgcttgatgctgagatgtcctgatcctgcttgtggtgctgctgttgatcaagatatgattaat |
42189321 |
T |
|
| Q |
358 |
tacgcagcatctgctgaagataaggagaagtatgatcgttatcttgttagatcttacattgaaaacaataaaaaggtatgtcgtaaagattcactttaga |
457 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||| ||| ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
42189322 |
cttttagcatctgctgaagataaacagaagtatgaccgttaccttattagatcttacattgaagacaataaaaaggtatgtcgtagagattcaacttaga |
42189421 |
T |
|
| Q |
458 |
cattgataatgata--taacaaatataaacttttatgtagtgtgcaatctgtgtataatctatatgttggctttctttttgggatgcattcatgataatt |
555 |
Q |
| |
|
|||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||| |
|
|
| T |
42189422 |
cattgataatgatagtaaatgaatatatacttttatgtagtgtgcaatctgtgtataatctatactttggctttctttttgctatgcattcataataatt |
42189521 |
T |
|
| Q |
556 |
cttt |
559 |
Q |
| |
|
|||| |
|
|
| T |
42189522 |
cttt |
42189525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 591 - 712
Target Start/End: Original strand, 42189754 - 42189875
Alignment:
| Q |
591 |
atctttgttttgtttagaccaagtggtgtcctgctcctggttgtgaacatgcagttaattttgatgctggtggtgaaaattatgacgtatcttgcctctg |
690 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42189754 |
atctttgttttgtttagaccaagtggtgtcctgctcctggttgtgaacatgcagttaattttgatgctggtggtgaaaattatgacgtatcttgcctctg |
42189853 |
T |
|
| Q |
691 |
ttcatatagcttttgctggaat |
712 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
42189854 |
ttcatatagcttttgctggaat |
42189875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 42188961 - 42189053
Alignment:
| Q |
168 |
gcttacttgcggcatctgttttgaaacttatggtcgttctaagattcacactgcttcttgcggtcatccgtactgtttttcatgctggagagg |
260 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||| |||||||||||||| |||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
42188961 |
gcttacttgcggcatctgttttgaagcttatcgtccttctaagattcacaatgcttcttgcggccatccgtactgtttttcatgctggggagg |
42189053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 62 - 161
Target Start/End: Original strand, 42188734 - 42188833
Alignment:
| Q |
62 |
ggaatgtcagtaatgttaatgaagcttggtttgctgatgaagacggagtccgaagaaaagttggtttgttggagaagccggtttgtgagaatcatgatgc |
161 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||| |||||||||||||| |||| ||||||| |||||| |
|
|
| T |
42188734 |
ggaatgtcagtaatgttaatgatgcttggtttgctgacgaagacagagtccgaagaaaagttggcttgttggagaagccagtttacgagaatcctgatgc |
42188833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 713 - 794
Target Start/End: Original strand, 42189971 - 42190052
Alignment:
| Q |
713 |
tgcactgaagatgctcaccgtccagtggattgcgacacagtgtcgaagtggattttgaaaaacagtgcagaatctgaaaaca |
794 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42189971 |
tgcactgaagaggctcatcgtccagtggattgtggcacagtgtcgaagtggattttgaaaaacagtgcagaatccgaaaaca |
42190052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 42188533 - 42188591
Alignment:
| Q |
5 |
caacagttctttccataccacctgttgctgcaagcatcctacttcgtcattataattgg |
63 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42188533 |
caacagttctttccataccaccagttgctgcaagcatcctacttcgtcattacaattgg |
42188591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 6e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 598 - 712
Target Start/End: Original strand, 25207928 - 25208042
Alignment:
| Q |
598 |
ttttgtttagaccaagtggtgtcctgctcctggttgtgaacatgcagttaattttgatgctggtggtgaaaattatgacgtatcttgcctctgttcatat |
697 |
Q |
| |
|
|||||| ||| | |||||||||||||| |||||||||||| |||| |||| |||||||||||| |||| ||||||||| || |||||||||||||| ||| |
|
|
| T |
25207928 |
ttttgtctagtcaaagtggtgtcctgcccctggttgtgaatatgcggttacttttgatgctggaggtggaaattatgatgtctcttgcctctgttcgtat |
25208027 |
T |
|
| Q |
698 |
agcttttgctggaat |
712 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
25208028 |
agcttttgttggaat |
25208042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 277 - 436
Target Start/End: Original strand, 25207474 - 25207633
Alignment:
| Q |
277 |
atcaacgatggtccgggatgcttgatgctgagatgtcctgatcccgcttgtggtgctgctgttgatcaagatacgattaggtacgcagcatctgctgaag |
376 |
Q |
| |
|
|||||||||||||| ||||| |||||| ||||||||||||| ||| ||||||| |||||| ||| |||||||| |||| | ||||| | ||||| |
|
|
| T |
25207474 |
atcaacgatggtcctggatgtttgatgttgagatgtcctgaacccacttgtggggctgctattggtcaagatatgattgatttattagcatgtaatgaag |
25207573 |
T |
|
| Q |
377 |
ataaggagaagtatgatcgttatcttgttagatcttacattgaaaacaataaaaaggtat |
436 |
Q |
| |
|
|||| || ||||||| ||||| ||| ||||||||| || ||| ||||||||||||||| |
|
|
| T |
25207574 |
ataaagaaaagtatgcccgttaccttcgtagatcttatatcgaagacaataaaaaggtat |
25207633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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