View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk367-LTR4-TNT-insertion-6 (Length: 287)
Name: Tnk367-LTR4-TNT-insertion-6
Description: Tnk367-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk367-LTR4-TNT-insertion-6 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 9 - 279
Target Start/End: Complemental strand, 10795869 - 10795599
Alignment:
| Q |
9 |
agtttctttattatgtaagaatttgttaaccatcttattcagtttgttactttatcttaggtaacaggcattgtaacaggttttgtactagtttggtttc |
108 |
Q |
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| T |
10795869 |
agtttctttattatgtaagaatttgttaaccatcttattcagtttgttactttatcttaggtaacaggcattgtaacaggttttgtactagtttggtttc |
10795770 |
T |
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| Q |
109 |
ctgctccaactgtttctcttaaacctcctcctgcaattagtgctggaattattgccaaattcttctatggatgtcctgaaaatgcttttcaggttaagac |
208 |
Q |
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| T |
10795769 |
ctgctccaactgtttctcttaaacctcctcctgcaattagtgctggaattattgccaaattcttctatggatgtcctgaaaatgcttttcaggttaagac |
10795670 |
T |
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| Q |
209 |
actctagctttctgcatctccttttcatattcggcataaaaatccagtgttcatcatataagtgcttatta |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10795669 |
actctagctttctgcatctccttttcatattcggcataaaaatccagtgttcatcatataagtgcttatta |
10795599 |
T |
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Target: scaffold0013 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 205
Target Start/End: Complemental strand, 58043 - 57915
Alignment:
| Q |
77 |
cattgtaacaggttttgtactagtttggtttcctgctccaactgtttctcttaaacctcctcctgcaattagtgctggaattattgccaaattcttctat |
176 |
Q |
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| T |
58043 |
cattgtagcagattttatgcttgtgtggcttcctgctccgaccgtttctcttcgaccaccaccttccgtcagtgctggacttattgctaaattcttcttc |
57944 |
T |
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| Q |
177 |
ggatgtcctgaaaatgcttttcaggttaa |
205 |
Q |
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| T |
57943 |
ggctgccctgaaaatgcttttcaggttaa |
57915 |
T |
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