View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk367-LTR4-TNT-insertion-7 (Length: 634)
Name: Tnk367-LTR4-TNT-insertion-7
Description: Tnk367-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk367-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr3 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 10 - 626
Target Start/End: Original strand, 38799291 - 38799904
Alignment:
| Q |
10 |
aaatcgaagcgttaattttatcgggacccccactataatcaagttctacaaaagtgcctcctccttcccctttggctaatcttcccggatttacggcaat |
109 |
Q |
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| T |
38799291 |
aaattgaagcgttaattttatcgagacccccactataatcaagttctacaaaagtgcctcctccttcccctttggctaatcttcccggatttacggcaat |
38799390 |
T |
|
| Q |
110 |
gcatttcatgcggttggtctcttcaccttcgttgtcaagaacctgcccagtgaatcatttataaatgttcaatcatgaagnnnnnnnncagtgcatttta |
209 |
Q |
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| T |
38799391 |
gcatttcatgcggttggtctcttcaccttcgttgtcaagaacctgcccagtgaatcatttataaatgttcaatcatgaagaaaaaaa--agtgcatttta |
38799488 |
T |
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| Q |
210 |
cttgtccagcgaccctgctcacaggcatatacatgtttagaagtgcatgcatctacgcagtgaacatgttactacttcattttcaagacacatttactat |
309 |
Q |
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| T |
38799489 |
cttgtccagcgaccctgctcacaggcatatacatgtttagaagtgcatgcatctacgcggtgaacatgttactacttcattttcaagacacatttactat |
38799588 |
T |
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| Q |
310 |
tttcacttttaattataaaacaatcacactatttagaatatttgttgcataaaatggtgttatttatctaattaaaagtgaaaatagataatataaacat |
409 |
Q |
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| T |
38799589 |
tttcacttttaattataaaacaatcacattatttagaagatttgttgcataaaatggtgttatttatctaattaaaagtgaaaatagataatataaacat |
38799688 |
T |
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| Q |
410 |
aaaataacattttgcagtannnnnnnnnnnnnnnnttcaagtttaaactgaaaataatttaccttgacaaagcacttgaggtctgagggtaagataagaa |
509 |
Q |
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| T |
38799689 |
aaaataacattttgcagta-tttttaaaaaaaaaattcaagtttaaactgaaaataatttaccttgacaaagtacttgaggtctgagggtaagataagaa |
38799787 |
T |
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| Q |
510 |
catctggaaccagtggtagttgaagggcttctggcgccagagagaagtccaagggaacactttctgctggtggataaagtggatagaaactgatataaaa |
609 |
Q |
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| T |
38799788 |
catctggaaccagtggtagttgaagggcttctggcgccagagagaagtccaagggaacactttcagctggtggataaagtggatagaaactgacataaaa |
38799887 |
T |
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| Q |
610 |
ttaaaaggtatcaattg |
626 |
Q |
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| T |
38799888 |
ttgaaaggtatcaattg |
38799904 |
T |
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