View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk367-LTR4-TNT-insertion-8 (Length: 591)
Name: Tnk367-LTR4-TNT-insertion-8
Description: Tnk367-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk367-LTR4-TNT-insertion-8 |
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Alignment Details
Target: chr6 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 6 - 581
Target Start/End: Complemental strand, 7568942 - 7568363
Alignment:
| Q |
6 |
cagccatagttgaatacagtgagaagctacctagtccttctaattcaaggtgttagcttggagatagtgtttgtgtttccacacatataaagtatggacc |
105 |
Q |
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| T |
7568942 |
cagccatagttgaatacagtgagaagctacctagtccttctaattcaaggtgttagcttggagatattgtttgtgtttccacacatataaagtatggacc |
7568843 |
T |
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| Q |
106 |
aatatgtactgtcagtgtaaagattttttatactgtcaataaattatgattgtctgatcactacaatacgattagttttgattacttgacagtgtaannn |
205 |
Q |
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| T |
7568842 |
aatatgtactgtcagtgtaaagattttttatactgtcaataaattatgattgtctgatcactacaatacgattagttttgattacttgacagtgtaattt |
7568743 |
T |
|
| Q |
206 |
nnnnnnnn-acagtgacaatatattaaaattaaactcataaattatagtattgattcaaagaatatacaagtactatagtactagcatgttttagcagtg |
304 |
Q |
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| T |
7568742 |
tttttttttacagtgacaatatattaaaattaaactcataaattatagtattgattctaagaatatacaagtactatagtactagcatgttttagcagtg |
7568643 |
T |
|
| Q |
305 |
tatcaaatgtggacggagttgtgactggctgcttttga-ttacaaaatcttctgccaacaagaaacttgtttgcataaacctgttgatctgacgatgttg |
403 |
Q |
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| T |
7568642 |
tatcaaatgtggacggagttgtgactggctgcttttgatttacaaaatcttctgccaacaagaaacttgtttgcataaacctgttgatctgatgatgttg |
7568543 |
T |
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| Q |
404 |
gcttgagacgtgctcctatgaaggtatcaagtttgatttttcccggtaccaattttgaaggatatctctattgatta--nnnnnnnnnnnnnctagaaac |
501 |
Q |
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| T |
7568542 |
gcttgagacatgctcctatgaaggtatcaagtttgatttttcccggtaccaattttgaagaatatctctattgattattttttttcttttttctagaaac |
7568443 |
T |
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| Q |
502 |
taaacccacaattttggataagggaaatactcagtttcccggtatacagtgtacaaactcggttgttaaatcaatgaatt |
581 |
Q |
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| T |
7568442 |
taaacccacaattttggataagggaaatacttagtttcccagtatacagtgtacaaactcagtcgttaaatcaatgaatt |
7568363 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 51048192 - 51048238
Alignment:
| Q |
113 |
actgtcagtgtaaagattttttatactgtcaataaattatgattgtc |
159 |
Q |
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| T |
51048192 |
actgtcagtataaagattttatacactgtcaataaataatgattgtc |
51048238 |
T |
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