View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk387-LTR4-TNT-insertion-1 (Length: 355)
Name: Tnk387-LTR4-TNT-insertion-1
Description: Tnk387-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk387-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 306
Target Start/End: Original strand, 36549590 - 36549884
Alignment:
| Q |
12 |
ttaaagcccgccttccccataatatgaccccgtattttgtcactaacacatcattccacaactccttttccttacctaataacttttgcgaccatttagg |
111 |
Q |
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| T |
36549590 |
ttaaagcccgtcttccccataatataaccccgtatttcgctactaacacttcattccacaactcctcttccttacctaataacttctgcgaccatttagc |
36549689 |
T |
|
| Q |
112 |
taaaagacgaacattcaccactttaagannnnnnncacctttaaaccactttcacttttatgtttccccacctcattccaactaactcaaccgattttcc |
211 |
Q |
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|||||||| |||||||||||| ||| | |||||||||||||||||||||||||||||| | |||||||||||||||||||||||| || |||| |
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| T |
36549690 |
taaaagactgacattcaccactctaaaatctctctcacctttaaaccactttcacttttatgtttacacacctcattccaactaactcaaccaatcttcc |
36549789 |
T |
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| Q |
212 |
tccttttgtttagaccgccgcacaaaaactccctttgaattttaacaacctccttccataccttggtaattggtagccattttaagaaaagagat |
306 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36549790 |
tcctcctgtttagaccgccgcacaaaaactccctttgaattttaacaacctccttccataccttggtaattggtagccattttaagaaaagagat |
36549884 |
T |
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