View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk387-LTR4-TNT-insertion-2 (Length: 655)
Name: Tnk387-LTR4-TNT-insertion-2
Description: Tnk387-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk387-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 587; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 11 - 645
Target Start/End: Original strand, 37238804 - 37239438
Alignment:
| Q |
11 |
aactctataactatcaagcaaaacataatctgtagtagctgtttacaattatctgtcctacacagttagcgaataatttgaaacacactgcagaacatta |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37238804 |
aactctataactatcaagcaaaacataatctgtagtagctgtttacaattatctgtcctacacagttagcgaataatttgaaacacactgcagaacatta |
37238903 |
T |
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| Q |
111 |
tttgtatgtacttcttgattttgtacatgtttgtatactttttgtataatcagttttgtatttgttctagatattactctgaatttgcctaaattttatg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37238904 |
tttgtatgtacttcttgattttgtacatgtttgtatactttttgtataatcagttttgtatttgttctagatattactctgaatttgcctaaattttatg |
37239003 |
T |
|
| Q |
211 |
aacaatgtaggtgcggttgattggatattgcgttgaagggtcacttttcctcgtatatgaacatattgacaatggaaacttgggtcaatatttacatggt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37239004 |
aacaatgtaggtgcggttgattggatattgcgttgaagggtcacttttcctcgtatatgaacatattgacaatggaaacttgggtcaatatttacatggt |
37239103 |
T |
|
| Q |
311 |
ataggtaagattaacaaaaatgtgctaatagttttatgtgattttacaatattgtcaaacagtcattaggtacgcagttagatgatttcaggtacagaac |
410 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||| |
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| T |
37239104 |
ataggtaagattaacaaaaatgtgctaatatttttatgtgattttacaatattgtcaaacagtcattaatgatg--gttagatgatttcaggtacagaac |
37239201 |
T |
|
| Q |
411 |
cattaccatggtctagtagagtgcagattgctctcgattcagccagaggccttgaatacattcatgaacacactgtgcctgtttatatccatcgcgacgt |
510 |
Q |
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| T |
37239202 |
cattaccatggtctagtagagtgcagattgctctagattcagccagaggcctagaatacattcatgaacacactgtgcctgtttatatccatcgcgacgt |
37239301 |
T |
|
| Q |
511 |
aaaatcagcaaatatattgatagacaaaaatttgcgtggaaaggttgcaatttgaccaatcttaatgatctatattataaattttaatttatcacttctt |
610 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37239302 |
aaaatcagcaaatatattgatagacaaaaatttgcgtggaaaggttgcaatttgaccaatcttaatgatctatattataaattttaatttatcacttctt |
37239401 |
T |
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| Q |
611 |
cttttacattaattaactc--tgaatggttttgaatt |
645 |
Q |
| |
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||||||||||||||||||| |||||||||||||||| |
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| T |
37239402 |
cttttacattaattaactctatgaatggttttgaatt |
37239438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 206 - 555
Target Start/End: Original strand, 37315455 - 37315803
Alignment:
| Q |
206 |
ttatgaacaatgtaggtgcggttgattggatattgcgttgaagggtcacttttcctcgtatatgaacatattgacaatggaaacttgggtcaatatttac |
305 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| | |
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| T |
37315455 |
ttatgaacaatataggtgcggttgattggatattgcgttgaaggatcacttttccttgtatatgaacacattgataatggaaacttgggtcaatatttgc |
37315554 |
T |
|
| Q |
306 |
atggtataggta--agattaacaaaaatgtgctaatagttttatgtgattttacaatattgtcaaacagtcattaggtacgcagttagatgatttcaggt |
403 |
Q |
| |
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|||||| ||||| | | || ||||| || ||||| ||||||| ||| |||||||||||||||| | | |||| ||| | | || ||| ||||| |
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| T |
37315555 |
atggtacaggtataaaagaaagaaaaaaatgttaatatttttatgcgatcttacaatattgtcaaaaaattattaatgacgta---acataattccaggt |
37315651 |
T |
|
| Q |
404 |
acagaaccattaccatggtctagtagagtgcagattgctctcgattcagccagaggccttgaatacattcatgaacacactgtgcctgtttatatccatc |
503 |
Q |
| |
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| ||||||||| |||||||||||||||||| | |||||||| |||||||| |||||||||||||||||||||||||| ||||||||| | |||||||||| |
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| T |
37315652 |
aaagaaccattgccatggtctagtagagtggaaattgctctagattcagcaagaggccttgaatacattcatgaacatactgtgcctatgtatatccatc |
37315751 |
T |
|
| Q |
504 |
gcgacgtaaaatcagcaaatatattgatagacaaaaatttgcgtggaaaggt |
555 |
Q |
| |
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| || |||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
37315752 |
gtgatgtaaaatcagcaaatatattgatagacaaaaacttacgtggaaaggt |
37315803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 432 - 507
Target Start/End: Original strand, 37203462 - 37203537
Alignment:
| Q |
432 |
tgcagattgctctcgattcagccagaggccttgaatacattcatgaacacactgtgcctgtttatatccatcgcga |
507 |
Q |
| |
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|||| ||||| || |||||||||||||| |||||||| ||||||||||| || || ||||| |||||||||||||| |
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| T |
37203462 |
tgcaaattgcgctggattcagccagaggtcttgaatatattcatgaacatacagtacctgtatatatccatcgcga |
37203537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 437 - 525
Target Start/End: Original strand, 37198484 - 37198572
Alignment:
| Q |
437 |
attgctctcgattcagccagaggccttgaatacattcatgaacacactgtgcctgtttatatccatcgcgacgtaaaatcagcaaatat |
525 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||| ||||| || || ||| ||||| ||||||||| |||| |||| |||||| |
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| T |
37198484 |
attgctctggattcagccagaggtcttgaatacattcacgaacataccgtccctacatatattcatcgcgacataaagtcagaaaatat |
37198572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 518
Target Start/End: Complemental strand, 37385395 - 37385309
Alignment:
| Q |
432 |
tgcagattgctctcgattcagccagaggccttgaatacattcatgaacacactgtgcctgtttatatccatcgcgacgtaaaatcag |
518 |
Q |
| |
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|||| |||||||| ||| ||| ||||||||||||||||||||||| || | |||||||| || |||||||||||| | ||||||| |
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| T |
37385395 |
tgcaaattgctctggatgtagcaagaggccttgaatacattcatgagcattcagtgcctgtatacatccatcgcgacatcaaatcag |
37385309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 298
Target Start/End: Original strand, 37203257 - 37203328
Alignment:
| Q |
227 |
ttgattggatattgcgttgaagggtcacttttcctcgtatatgaacatattgacaatggaaacttgggtcaa |
298 |
Q |
| |
|
|||||||||||||| |||||||| | || ||||| || |||||| | |||||||||||||||||| ||||| |
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| T |
37203257 |
ttgattggatattgtgttgaaggttttctcttccttgtctatgaatacattgacaatggaaacttgagtcaa |
37203328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 518
Target Start/End: Original strand, 37232537 - 37232618
Alignment:
| Q |
437 |
attgctctcgattcagccagaggccttgaatacattcatgaacacactgtgcctgtttatatccatcgcgacgtaaaatcag |
518 |
Q |
| |
|
|||||||| ||| ||| ||||||||||| || |||||||| || | |||||||| ||||||||||| ||| ||||||||| |
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| T |
37232537 |
attgctctggatgtagcaagaggccttgagtatattcatgatcattcggtgcctgtatatatccatcgtgacataaaatcag |
37232618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 431 - 557
Target Start/End: Original strand, 36199538 - 36199664
Alignment:
| Q |
431 |
gtgcagattgctctcgattcagccagaggccttgaatacattcatgaacacactgtgcctgtttatatccatcgcgacgtaaaatcagcaaatatattga |
530 |
Q |
| |
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||||| |||||| | ||||| |||||||| |||||||| || ||||| || || |||||||| ||||| ||||| ||| |||| ||||||||||||||| |
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| T |
36199538 |
gtgcaaattgctttggattctgccagaggtcttgaatatatccatgagcatacagtgcctgtatatattcatcgtgacataaagccagcaaatatattga |
36199637 |
T |
|
| Q |
531 |
tagacaaaaatttgcgtggaaaggttg |
557 |
Q |
| |
|
||||||| || || || |||||||||| |
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|
| T |
36199638 |
tagacaagaacttccggggaaaggttg |
36199664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 219 - 297
Target Start/End: Original strand, 36199326 - 36199404
Alignment:
| Q |
219 |
aggtgcggttgattggatattgcgttgaagggtcacttttcctcgtatatgaacatattgacaatggaaacttgggtca |
297 |
Q |
| |
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|||||||||||||||||||| | ||||||| || |||||||| || |||||| | ||||| || ||||||||| |||| |
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| T |
36199326 |
aggtgcggttgattggatatagtattgaaggctctcttttccttgtctatgaatacattgagaacggaaacttgagtca |
36199404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 427 - 556
Target Start/End: Complemental strand, 8733195 - 8733066
Alignment:
| Q |
427 |
tagagtgcagattgctctcgattcagccagaggccttgaatacattcatgaacacactgtgcctgtttatatccatcgcgacgtaaaatcagcaaatata |
526 |
Q |
| |
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|||||| |||||||| | || ||||| ||||| | ||||||||||||||||| || || ||||| || || ||||| || || ||||| ||||| || |
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| T |
8733195 |
tagagttcagattgcattagactcagcaagaggattggaatacattcatgaacatacagttcctgtctacattcatcgagatgttaaatcggcaaacatt |
8733096 |
T |
|
| Q |
527 |
ttgatagacaaaaatttgcgtggaaaggtt |
556 |
Q |
| |
|
|||||||||||||| || || ||||||||| |
|
|
| T |
8733095 |
ttgatagacaaaaacttccgcggaaaggtt |
8733066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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