View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk387-LTR4-TNT-insertion-3 (Length: 425)
Name: Tnk387-LTR4-TNT-insertion-3
Description: Tnk387-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk387-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 7 - 415
Target Start/End: Original strand, 37865260 - 37865655
Alignment:
| Q |
7 |
aatcagtaccaaatttatgcatgtaacaattaagtggcaaaatcacacacctaacagtggtcggatacatcaattcattagtttcagatgatagcaaaaa |
106 |
Q |
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| T |
37865260 |
aatcagtaccaaatttatgcatgtaacaattaagtggcaaaatcacacacctaacagtggtcggatacatcaattcattagtttcagatgatagcaaaaa |
37865359 |
T |
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| Q |
107 |
tgtaaaattatgtttatttcagaacatcgtgttttccacgtccaattaaccttaatacacagtatagttttcaaacaaagatgacgtactaaatttagtt |
206 |
Q |
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| T |
37865360 |
tgtaaaattatgtttatttcagaacaccatgttttacacgtccaattaaccttaatacacagtatagttttcaaacaatgatgacgtactaaatttagtt |
37865459 |
T |
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| Q |
207 |
ttgtgac--aataaaatagagttatagtgtaccaaaagaaaatagagtctataatagaagaatcttattccaataaaagaacttatatattgtataaatg |
304 |
Q |
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| T |
37865460 |
ttgtgacaaaataaaatagagttatagtgtaccaaaagaaaatagagtctataatagaagaatcttattccaataaaagaacttatatattgtat----- |
37865554 |
T |
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| Q |
305 |
ctgaaaccagtcgtgaaggctacaagagagggacctagaatatttactgattttggtacacaccacacgcatagttcttagataattgcttcatatatat |
404 |
Q |
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| T |
37865555 |
--------agtcgtgaaggctacaagagagggacctagaatatttactggttttggt--acaccacacgcatagttcttagataattgcttcatatatat |
37865644 |
T |
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