View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk387-LTR4-TNT-insertion-4 (Length: 828)
Name: Tnk387-LTR4-TNT-insertion-4
Description: Tnk387-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk387-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 355 - 704
Target Start/End: Complemental strand, 49569314 - 49568965
Alignment:
| Q |
355 |
ctaaaattatgtgattttcaaacttagtatatctgattattttatggcctgtgggtgttatgttatggtacaaaattacattttctaatattgctggaac |
454 |
Q |
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| T |
49569314 |
ctaaaattatgtgattttcaaacttagtatatctgattattttatggcctgtgggtgttatgttatggtacaaaattactttttctaatattgctggaac |
49569215 |
T |
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| Q |
455 |
aaaattgaatgccccttatcacaagtcacagctcctatctatcttatcatgtaattgcttgtaatgagacgtcccttttttgtaagaggtaatgagatat |
554 |
Q |
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| T |
49569214 |
aaaattgaatgccccttatcacaagtcacagctcctatctatcttatcatgtaattgcttgtaatgagacgtcccttttttgtaagaggtaatgagatct |
49569115 |
T |
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| Q |
555 |
ccttgacttatcacatctcattttccccatattcattaataaatgggttgagattatccttgttcagtgtcaaactagctagctagatgtaaagccaaag |
654 |
Q |
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| T |
49569114 |
ccttgacttatcacatctcattttccccttattcattaataaatgggttgagattatccttgttcagtgtcaaactagctagctagatgtaaagccaaag |
49569015 |
T |
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| Q |
655 |
ccactaggattgatctattggtgagggatttgggtacaccgaaacaattt |
704 |
Q |
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| T |
49569014 |
ccactaggattgatctattggtgagggatttgggtacaccgaaacaattt |
49568965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 8 - 296
Target Start/End: Complemental strand, 49569661 - 49569373
Alignment:
| Q |
8 |
attcatgggcttttgagaaccggtgctgtttctacaacttagcattttaacaacaaaggtgtaaaagaagactaacagcttcagttctgattgcaaagct |
107 |
Q |
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| T |
49569661 |
attcatgggcttttgagaaccggtgttgtttctacaacttagcattttaacaacaaaggtgtaaaagaagactaatagcttcagttctgattgcaaagct |
49569562 |
T |
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| Q |
108 |
ttctcaaatttctgaggtggtaattttatgcattagttttaataatatgcagcctgctttggaatggagattaatatagcatgtcaaactcaatatcatt |
207 |
Q |
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| T |
49569561 |
ttctcaaatttctgaggtggtaattttatgcattagttttaataatatgcagcctgctttggaatggagattaatatggcatgtcaaactcaatatcatt |
49569462 |
T |
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| Q |
208 |
gacaacacaatctattttgaggtatgatttcatgagatggtcatggttatatactactatctcccctgctttgggatatcacgtgtagc |
296 |
Q |
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| T |
49569461 |
gataacacaatctattttgaggtatgatttcatgagatggtcatggttatatactactatctcccctgctttgggatatcacgtgtagc |
49569373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 713 - 828
Target Start/End: Complemental strand, 49568525 - 49568410
Alignment:
| Q |
713 |
ttatcaacatcgtatgcatgcagcctcaaatgagcgagtgaccgcggccaacaagaaatcatctgcatcgctaataaaactattccaataccccatatat |
812 |
Q |
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| T |
49568525 |
ttatcaacatcgtatgcatgcagcctcaaatgagcgagtgaccgcggccaacaagaaatcatctgcatcgctaataaaactattccaataccccatatat |
49568426 |
T |
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| Q |
813 |
tattcatcgaataaca |
828 |
Q |
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| T |
49568425 |
tattcatcgaacaaca |
49568410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 586 - 704
Target Start/End: Complemental strand, 49560950 - 49560837
Alignment:
| Q |
586 |
ttcattaataaatgggttgagattatccttgttcagtgtcaaactagctagctagatgtaaagccaaagccactaggattgatctattggtgagggattt |
685 |
Q |
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| T |
49560950 |
ttcattaataaaagcattgagattctccttgttcagtg-----ctaattagctagttgtaaagccaaaccctctaggattgatctattgatgacggattt |
49560856 |
T |
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| Q |
686 |
gggtacaccgaaacaattt |
704 |
Q |
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| T |
49560855 |
gggtacaccaaaacaattt |
49560837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 443 - 488
Target Start/End: Complemental strand, 49561056 - 49561011
Alignment:
| Q |
443 |
tattgctggaacaaaattgaatgccccttatcacaagtcacagctc |
488 |
Q |
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| T |
49561056 |
tattgctgtaacaaaattgaatgccccttatcacaagtcacagctc |
49561011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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