View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk387-LTR4-TNT-insertion-6 (Length: 569)
Name: Tnk387-LTR4-TNT-insertion-6
Description: Tnk387-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk387-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 8 - 561
Target Start/End: Complemental strand, 38067469 - 38066916
Alignment:
| Q |
8 |
ggtttcggctgaaaattttagtttgatgtatcttgatctttcgaacaacaacttgagtggaactctttcttcgaaaattaaggagcttcataatttggta |
107 |
Q |
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| T |
38067469 |
ggtttctgctgaaaattttagtttgatgtatcttgatctttcgaacaacaacttgagtggaattctttcttcgaaaattaaggagcttcataatttggta |
38067370 |
T |
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| Q |
108 |
tatctcaatctatgtaacaacaaattagaaggtactattcctaatgatcttccagatgagttaagagaactcaatgtgtcctttaataatttttctgggg |
207 |
Q |
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| T |
38067369 |
tatctcaatctatgtaacaacaaattagaaggtactattcctaatgatcttccagatgagttaagagaactcaatgtgtcctttaataatttttctgggg |
38067270 |
T |
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| Q |
208 |
ttgtacctgataacttatcacagtttcctgaatcagcatttcatcctggaaatactatgctgatatttcctaattctcatttatcacctaaagatagttc |
307 |
Q |
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| T |
38067269 |
ttgtacctgataacttatcacagtttcctgaatcagcatttcatcctggaaatactatgctgatatttcctaattctcatttatcacctaaagatagttc |
38067170 |
T |
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| Q |
308 |
caattccaacctaggttcgaggtcacatgagaaaactttcactaggagtgtcttgattacatgtatagttaccggtgtttttgtgatagctataatggct |
407 |
Q |
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| T |
38067169 |
caattccaacctaggttcgaggtcacatgagaaaactttcactaggagtgtcttgattacatgtatagttaccggtgtttttgtgatagctataatggct |
38067070 |
T |
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| Q |
408 |
gccatgatttattataggattcatcagaaaaaaggaagtacttctaaacaagatgcaacaacaagtgacatcatccaggagagtacttctccatcaaaga |
507 |
Q |
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| T |
38067069 |
gccatgatttattataggattcatcagaaaaaaggaagtacttctaaacaagatgcaacaacaagtgacatcatccaagagagtacttctccatcaaaga |
38066970 |
T |
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| Q |
508 |
gaagaaatttggagtcattaccgccttctcaaagtgaagataccggaaacatta |
561 |
Q |
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| T |
38066969 |
gaagaaatttggagtcattaccgccttctcaaagtgaagataccggaaacatta |
38066916 |
T |
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