View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk387-LTR4-TNT-insertion-7 (Length: 736)
Name: Tnk387-LTR4-TNT-insertion-7
Description: Tnk387-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk387-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr8 (Bit Score: 642; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 10 - 727
Target Start/End: Complemental strand, 39675950 - 39675243
Alignment:
| Q |
10 |
gtcttgaatcgctatatataaggattagtgttcagtttttgtatcaagttaaagttagtatcaaatagggaaatacgggcgtcttacaaaatcatttccc |
109 |
Q |
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| T |
39675950 |
gtcttgaatcgctatatataaggattagtgtttagtttttgtatcaagtta------gtatcaaatagggaaatatgggcgtcttacaaaatcatttccc |
39675857 |
T |
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| Q |
110 |
tattagtgttttttatgttaaaaaatcaatttcttaatttttcctattagtggacgaaagtttttcagttcctcagatatgtctcacttatgacatgact |
209 |
Q |
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| T |
39675856 |
tattagtgttttttatgttacaaaatcaatttcttaatttttcctattagtggacgaaagtttttcagttcctcagatatgtctcacttatgacctaact |
39675757 |
T |
|
| Q |
210 |
gaaatccttaatgtttcatttttgaagtcttctgtttgtcatgtttgtaatgctatttattatttagcagtggaattgttgcagacatcactgttaagta |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||| |
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| T |
39675756 |
gaaatccttaatgtttcatttttgaagtcttctgtttgtcatgtttgtaatgctatttattatttagcagtggaattgttgcagacatgaccgataagta |
39675657 |
T |
|
| Q |
310 |
aatattttacagaaaaatgattttccatgtttagcaagctactaatgtatgggcatgcattgacgtgaaacttactgcctatgtagagccttactattca |
409 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39675656 |
aatattttacagaaaaatgattttccatgtttatcaagctactaatgtatgggcatgcattgacgtgaaacttactgcctatgtagagccttactattca |
39675557 |
T |
|
| Q |
410 |
gaacatagaaagctgactaaaagttgtcctatcaaaaagcgtgaataagaagacaaaaagctataaataaatgattttgcatgattgaagagaaaaactc |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39675556 |
gaacatagaaagctgactaaaagttgtcctatcaaaaagcgtgaataagaagacaaaaagctataaataaatgattttgcatgattgaagagaaaaactc |
39675457 |
T |
|
| Q |
510 |
ttgggcactagtaatggctataccaactatttgaagctagcagttcaatgccgtaaaagcattggtgatagctagaaattgctagctgttacccttggtt |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39675456 |
ttgggcactagtaatggctataccaactatttgaagctagcagttcaatgccgtaaaagcattggtga----tagaaattgctagctgttacccttggtt |
39675361 |
T |
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| Q |
610 |
atttgctagattttagggaaattttcatctgaataaaagctagggatgttttggttttatgtcttgaccatgtagctattttgaattggtgatgatgtag |
709 |
Q |
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| T |
39675360 |
atttgctagattttagggaaattttcatctgaataaaagctagggatgttttggttttatgtcttgaccatgtagctattttgaattggtgatgatgtag |
39675261 |
T |
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| Q |
710 |
cgttgtttagtgcaattg |
727 |
Q |
| |
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|||||||||||||||||| |
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| T |
39675260 |
cgttgtttagtgcaattg |
39675243 |
T |
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