View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk392-LTR4-TNT-insertion-1 (Length: 146)
Name: Tnk392-LTR4-TNT-insertion-1
Description: Tnk392-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk392-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 4e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 44166628 - 44166756
Alignment:
| Q |
8 |
tttgtgtgaccacgtagagcacctatgactatcaaattaccattttcacctttttcagataccaatattgatctatcacatgcaccggaatacaaaaccg |
107 |
Q |
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| T |
44166628 |
tttgtgtgaccacgtagagcacctatgactatcaaattaccattttcacctttttcagataccaatattgatctatcacatgcaccggaatacaaaaccg |
44166727 |
T |
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| Q |
108 |
aaccgtcactgttaagagccaatgcatta |
136 |
Q |
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| T |
44166728 |
aaccgtcactgttaagagccaatgcatta |
44166756 |
T |
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Target: chr3 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 101
Target Start/End: Original strand, 35312541 - 35312576
Alignment:
| Q |
66 |
ataccaatattgatctatcacatgcaccggaataca |
101 |
Q |
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| T |
35312541 |
ataccaatattgatctatcacaagcaccagaataca |
35312576 |
T |
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