View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Tnk392-LTR4-TNT-insertion-3 (Length: 296)
Name: Tnk392-LTR4-TNT-insertion-3
Description: Tnk392-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk392-LTR4-TNT-insertion-3 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 10 - 286
Target Start/End: Original strand, 43777410 - 43777687
Alignment:
| Q |
10 |
attgttttgttaaagactcttatatattgttatagataatattgttcttatcatcagctagttgaacggtttctttctctttaatcccatcagctttttt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43777410 |
attgttttgttaaagactcttatatattgttatagataatattgttcttattatcagctagttgaacggtttctttctctttaatcccatcagcttcttt |
43777509 |
T |
|
| Q |
110 |
ctctttccgatgatatgaaatcggatcaa-tattacgaataacaatatatgagctatcaactatcatttaatagctaaccttttatgtttgcaaatttta |
208 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
43777510 |
ctctttccgatgatatgaaatcggatcaaatattacgaataacaatatctgagctatcaactattatttaatagctaaccttttatgtttgcaaatttta |
43777609 |
T |
|
| Q |
209 |
taacatcccttgacgcaggaacgataatgaaaaatgtctctgaaacatgttctagttaagcattcgaaacgacaatta |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43777610 |
taacatcccttgacgcaggaacgataatgaaaaatgtctctgaaacatgttctagttaaacattcgaaacgacaatta |
43777687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 43780826 - 43780883
Alignment:
| Q |
19 |
ttaaagactcttatatattgttatagataatattgttcttatcatcagctagttgaac |
76 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
43780826 |
ttaaagatttttatatattgttatagataatattgttcttattatcagttagttgaac |
43780883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 18159170 - 18159221
Alignment:
| Q |
117 |
cgatgatatgaaatcggatcaatattacgaataacaatatatgagctatcaa |
168 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
18159170 |
cgatgatataaaatcggatcaatatcacgaataacaatatctgagctatcaa |
18159221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 419157 - 419206
Alignment:
| Q |
119 |
atgatatgaaatcggatcaatattacgaataacaatatatgagctatcaa |
168 |
Q |
| |
|
||||||| |||||| |||||||| |||||||||||||| ||||||||||| |
|
|
| T |
419157 |
atgatataaaatcgaatcaatatcacgaataacaatatctgagctatcaa |
419206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University