View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Tnk392-LTR4-TNT-insertion-4 (Length: 568)
Name: Tnk392-LTR4-TNT-insertion-4
Description: Tnk392-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk392-LTR4-TNT-insertion-4 |
 |  |
|
| [»] scaffold0525 (1 HSPs) |
 |  |  |
|
| [»] scaffold1412 (1 HSPs) |
 |  |  |
|
| [»] scaffold0001 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: scaffold0525 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: scaffold0525
Description:
Target: scaffold0525; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 8 - 416
Target Start/End: Original strand, 6394 - 6800
Alignment:
| Q |
8 |
ccttggacagaagcacaacgacgcttaaccattcataacagaagcttaacaacatagcttaaccatcatgaacagaagcacaagacaagaagagcaagga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6394 |
ccttggacagaagcacaacgacgcttaaccattcatgacaaaagcttatcaacatagcttaaccatcatgaacagaagcacaagacaagaagagtaagga |
6493 |
T |
 |
| Q |
108 |
tatctaaaatcaatgatgatatccaaaagaaaa-gaagtgcaagaaagggccaaagtttaccatggaaggaggtcatatgttgaacaaactgcacaccaa |
206 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6494 |
tatccaaaatcaatgatgatatccaaaagaaaaagaagtgcaaggaagggccaaagtttacaatggaaggaggtcatatgttgaacaaactgcataccaa |
6593 |
T |
 |
| Q |
207 |
aggtacaatgaagcaacaagaccaaggttccaaagttaaaaaagagatgtcctccaatgccaagccgagacaagaaaaaccaaatgcaagccaatagatc |
306 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
6594 |
aggtaccatgaagcaacaagaccaaggttccaaagttaaaaaagagatgccctccaatgccgagctgagacaagaaaaatcaaatgcaagccaatag--- |
6690 |
T |
 |
| Q |
307 |
agatgcatagccatgtgaggtgtcttcaaaccatagaaaacaaatccatgttgatgcattcaaaccataggccaaaacccatgcttccaataatgaagct |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6691 |
agatgcatagccatgtgaggtgtcttcaaaccatagaaaacaaatccatgttgatgcattcaaaccataggccaaaacccatgcttccaataatgaagct |
6790 |
T |
 |
| Q |
407 |
aaaacaaatc |
416 |
Q |
| |
|
||| |||||| |
|
|
| T |
6791 |
aaaccaaatc |
6800 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 8 - 416
Target Start/End: Complemental strand, 41832272 - 41831866
Alignment:
| Q |
8 |
ccttggacagaagcacaacgacgcttaaccattcataacagaagcttaacaacatagcttaaccatcatgaacagaagcacaagacaagaagagcaagga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41832272 |
ccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccatcatgaacagaagcacaagacaagaagagtaagga |
41832173 |
T |
 |
| Q |
108 |
tatctaaaatcaatgatgatatccaaaagaaaa-gaagtgcaagaaagggccaaagtttaccatggaaggaggtcatatgttgaacaaactgcacaccaa |
206 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41832172 |
tatccaaaatcaatgatgatatccaaaagaaaaagaagtgcaaggaagggccaaagtttacaatggaaggaggtcatatgttgaacaaactgcataccaa |
41832073 |
T |
 |
| Q |
207 |
aggtacaatgaagcaacaagaccaaggttccaaagttaaaaaagagatgtcctccaatgccaagccgagacaagaaaaaccaaatgcaagccaatagatc |
306 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
41832072 |
aggtaccatgaagcaacaagaccaaggttccaaagttaaaaaagagatgccctccaatgccgagctgagacaagaaaaatcaaatgcaagccaatag--- |
41831976 |
T |
 |
| Q |
307 |
agatgcatagccatgtgaggtgtcttcaaaccatagaaaacaaatccatgttgatgcattcaaaccataggccaaaacccatgcttccaataatgaagct |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41831975 |
agatgcatagccatgtgaggtgtcttcaaaccatagaaaacaaatccatgttgatgtattcaaaccataggccaaaacccatgcttccaataatgaagct |
41831876 |
T |
 |
| Q |
407 |
aaaacaaatc |
416 |
Q |
| |
|
||| |||||| |
|
|
| T |
41831875 |
aaaccaaatc |
41831866 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 34512485 - 34512293
Alignment:
| Q |
8 |
ccttggacagaagcacaacgacgcttaaccattcataacagaagcttaacaacatagcttaaccatcatgaacagaagcacaagacaagaagagcaagga |
107 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
34512485 |
ccttggacagaagcacaacg---cttaaccattcatgacagaagcttattaacatagcttaaccatcatgaacagaagcacaagacaagaaaaacaagga |
34512389 |
T |
 |
| Q |
108 |
tatctaaaatcaatgatgatatccaaaagaaaagaagtgcaagaaagggccaaagtttaccatggaaggaggtcatatgttgaacaaactgcacac |
203 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34512388 |
tatccaaaatcaatgatgatatccaaaagaaaagaagtgcaaggaagggccaaagtctacaatggaaggaggtcatatgttgaacaaacttcacac |
34512293 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 68 - 236
Target Start/End: Complemental strand, 7734919 - 7734751
Alignment:
| Q |
68 |
aaccatcatgaacagaagcacaagacaagaagagcaaggatatctaaaatcaatgatgatatccaaaagaaaag-aagtgcaagaaagggccaaagttta |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||| |||||| ||||||||||||||||||||| |||||| || |||||| |||| || || | || |
|
|
| T |
7734919 |
aaccatcatgaacagaagcacaagacaagaaaa-caatgatatccaaaatcaatgatgatatccaagagaaaaacaattgcaaggaaggccccaaatcta |
7734821 |
T |
 |
| Q |
167 |
ccatggaaggaggtcatatgttgaacaaactgcacaccaaaggtacaatgaagcaacaagaccaaggttc |
236 |
Q |
| |
|
| |||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
7734820 |
caatggaaggagatcatatgttgaacaaacttcacaccaaaggtaccatgaagcaacaagacctaggttc |
7734751 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 307 - 405
Target Start/End: Complemental strand, 7734645 - 7734548
Alignment:
| Q |
307 |
agatgcatagccatgtgaggtgtcttcaaaccatagaaaacaaatccatgttgatgcattcaaaccataggccaaaacccatgcttccaataatgaagc |
405 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||| ||||| | ||||||||||| |||||||||| |||||||| |
|
|
| T |
7734645 |
agatgcatagccatgtgatgtgtcttcaaaccatagaaaaccaatccatgtggatgcactcaaa-tagaggccaaaaccaatgcttccaacaatgaagc |
7734548 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 8 - 410
Target Start/End: Complemental strand, 21256286 - 21255886
Alignment:
| Q |
8 |
ccttggacagaagcacaacgacgcttaaccattcataacagaagcttaacaacatagcttaaccatcatgaacagaagcacaagacaagaagagcaagga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21256286 |
ccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccatcatgaacagaagcacaagacaagaagagtaagga |
21256187 |
T |
 |
| Q |
108 |
tatctaaaatcaatgatgatatccaaaagaaaa-gaagtgcaagaaagggccaaagtttaccatggaaggaggtcatatgttgaacaaactgcacaccaa |
206 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21256186 |
tatccaaaatcaatgatgatatccaaaagaaaaagaagtgcaaggaagggccaaagtttacaatggaaggaggtcatatgttgaacaaactgcacaccaa |
21256087 |
T |
 |
| Q |
207 |
aggtacaatgaagcaacaagaccaaggttccaaagttaaaaaagagatgtcctccaatgccaagccgagacaagaaaaaccaaatgcaagccaatagatc |
306 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21256086 |
aggtaccatgaagcaacaagaccaaggttccaaagttaaaaaagagatgccctccaatgccgagccgagacaagaaaaaccaaatgcaagccaatag--- |
21255990 |
T |
 |
| Q |
307 |
agatgcatagccatgtgaggtgtcttcaaaccatagaaaacaaatccatgttgatgcattcaaaccataggccaaaacccatgcttccaataatgaagct |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
21255989 |
tgatgcatagccatgtgaggtgtcttcaaaccatagaaaacaaatccatgttgatgcattcaaaccataggccaaaaccaatgcttccaatgctgaagct |
21255890 |
T |
 |
| Q |
407 |
aaaa |
410 |
Q |
| |
|
|||| |
|
|
| T |
21255889 |
aaaa |
21255886 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 8 - 292
Target Start/End: Original strand, 35305088 - 35305374
Alignment:
| Q |
8 |
ccttggacagaagcacaacgacgcttaaccattcataacagaagcttaacaacatagcttaaccatcatgaacagaagcacaagacaagaagagcaagga |
107 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||| || ||||| || |||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35305088 |
ccttggacagaagcacaacaacgcttaactattcatgacggaagcatatcaacatgtcttaaccatcatgaacagaagcacaagacaagaaatacaagga |
35305187 |
T |
 |
| Q |
108 |
tatctaaaatcaatgatgatatccaaaagaaaagaagtgcaagaaagggccaaagtttaccatggaaggaggtcatatgttgaacaaactgcacaccaaa |
207 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||| ||||| |||| | ||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35305188 |
tatccaaaatcaatgatgatatccaaagaaaaagaagtgcaaggaagggtcaaaatctacaatggaaggaggtcatatgttgaacaaacttcacaccaaa |
35305287 |
T |
 |
| Q |
208 |
ggtacaatgaagcaacaagaccaaggttccaa-agtta-aaaaagagatgtcctccaatgccaagccgagacaagaaaaaccaaatg |
292 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| || || ||||||||||| ||||||||| | ||||||||||| || ||||||||| |
|
|
| T |
35305288 |
ggtaccctgaagcaacaagatcaaggttccaagagatataaaaagagatgccctccaatgtcgagccgagacaaaaagaaccaaatg |
35305374 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 307 - 418
Target Start/End: Original strand, 35305430 - 35305540
Alignment:
| Q |
307 |
agatgcatagccatgtgaggtgtcttcaaaccatagaaaacaaatccatgttgatgcattcaaaccataggccaaaacccatgcttccaataatgaagct |
406 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||| ||||||||| |||||| ||||| | ||||||||||| |||||||||| ||||||||| |
|
|
| T |
35305430 |
agatgcatagccatgcaatgtgtcttcaaaccatagaaaaccaatccatgtggatgcactcaaa-tagaggccaaaaccaatgcttccaacaatgaagct |
35305528 |
T |
 |
| Q |
407 |
aaaacaaatcca |
418 |
Q |
| |
|
||||| ||||| |
|
|
| T |
35305529 |
caaacatatcca |
35305540 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 41949908 - 41949980
Alignment:
| Q |
11 |
tggacagaagcacaacgacgcttaaccattcataacagaagcttaacaacatagcttaaccatcatgaacagaagc |
86 |
Q |
| |
|
|||| ||||||||||| |||||||||||| ||| |||||||| |||||| |||||||||||||| |||||||| |
|
|
| T |
41949908 |
tggatagaagcacaacaacgcttaaccatccatgacagaagc---acaacaaggcttaaccatcatggacagaagc |
41949980 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 8 - 395
Target Start/End: Complemental strand, 24039125 - 24038740
Alignment:
| Q |
8 |
ccttggacagaagcacaacgacgcttaaccattcataacagaagcttaacaacatagcttaaccatcatgaacagaagcacaagacaagaagagcaagga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24039125 |
ccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccatcatgaacagaagcacaagacaagaagagtaagga |
24039026 |
T |
 |
| Q |
108 |
tatctaaaatcaatgatgatatccaaaagaaaa-gaagtgcaagaaagggccaaagtttaccatggaaggaggtcatatgttgaacaaactgcacaccaa |
206 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24039025 |
tatccaaaatcaatgatgatatccaaaagaaaaagaagtgcaaggaagggccaaagtttacaatggaaggaggtcatatgttgaacaaactgcacaccaa |
24038926 |
T |
 |
| Q |
207 |
aggtacaatgaagcaacaagaccaaggttccaaagttaaaaaagagatgtcctccaatgccaagccgagacaagaaaaaccaaatgcaagccaatagatc |
306 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24038925 |
aggtaccatgaagcaacaagaccaaggttccaaagttaaaaaagagatgccctccaatgccgagctgagacaagaaaaaccaaatgcaagccaatag--- |
24038829 |
T |
 |
| Q |
307 |
agatgcatagccatgtgaggtgtcttcaaaccatagaaaacaaatccatgttgatgcattcaaaccataggccaaaacccatgcttcca |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24038828 |
agatgcatagccatgtgaggtgtcttcaaaccaaagaaaacaaatccatgttgatgcattcaaaccataggtcaaaacccatgcttcca |
24038740 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 381
Target Start/End: Original strand, 31269933 - 31270304
Alignment:
| Q |
8 |
ccttggacagaagcacaacgacgcttaaccattcataacagaagcttaacaacatagcttaaccatcatgaacagaagcacaagacaagaagagcaagga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31269933 |
ccttggacagaagcacaacgacgcttaaccattaatgacaaaagcttatcaacatagcttaaccatcatgaacagaagcacaagacaagaagagtaagga |
31270032 |
T |
 |
| Q |
108 |
tatctaaaatcaatgatgatatccaaaagaaaa-gaagtgcaagaaagggccaaagtttaccatggaaggaggtcatatgttgaacaaactgcacaccaa |
206 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31270033 |
tatccaaaatcaatgatgatatccaaaagaaaaagaagtgcaaggaagggccaaagtttacaatggaaggaggtcatatgttgaacaaactacacaccaa |
31270132 |
T |
 |
| Q |
207 |
aggtacaatgaagcaacaagaccaaggttccaaagttaaaaaagagatgtcctccaatgccaagccgagacaagaaaaaccaaatgcaagccaatagatc |
306 |
Q |
| |
|
|||||| || ||||||||| | ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
31270133 |
aggtaccataaagcaacaaaaacaaggttccaaagttaaaaaagagatgccctccaatgccgagccgagacaagaaaaaccaaatgcaagccaatcg--- |
31270229 |
T |
 |
| Q |
307 |
agatgcatagccatgtgaggtgtcttcaaaccatagaaaacaaatccatgttgatgcattcaaaccataggccaa |
381 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31270230 |
agatgcatagccatgtgatgtgtcttcaaaccatagaaaacaaatccacgttgatgcattcaaaccataggccaa |
31270304 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 8 - 381
Target Start/End: Original strand, 7275616 - 7275984
Alignment:
| Q |
8 |
ccttggacagaagcacaacgacgcttaaccattcataacagaagcttaacaacatagcttaaccatcatgaacagaagcacaagacaagaagagcaagga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7275616 |
ccttggacagaagcacaacgacgcttaaccattcatgacagaagcttatcaacatagcttaaccatcatgaacagaagcacaagacaagaagagtaagga |
7275715 |
T |
 |
| Q |
108 |
tatctaaaatcaatgatgatatccaaaagaaaagaagtgcaagaaagggccaaagtttaccatggaaggaggtcatatgttgaacaaactgcacaccaaa |
207 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7275716 |
tatctaaaatcaatgatgatctccaaaagaaaa--agtgcaaggaagggccaaagtttacaatggaaggaggtcatatgttgaacaaactgcacatcaaa |
7275813 |
T |
 |
| Q |
208 |
ggtacaatgaagcaacaagaccaaggttccaaagttaaaaaagagatgtcctccaatgccaagccgagacaagaaaaaccaaatgcaagccaatagatca |
307 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7275814 |
ggtaccatgaagcaacaagaccaaggttccaaagttaaaaaagagatgcgctccaatgccgagccgagacaagaaaaaccaaatgcaagccaatag---a |
7275910 |
T |
 |
| Q |
308 |
gatgcatagccatgtgaggtgtcttcaaaccatagaaaacaaatccatgttgatgcattcaaaccataggccaa |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7275911 |
gatgcatagccatgtgaggtgtcttcaaaccatagaaaacaaatccatgttgatgcattcaaaccataggccaa |
7275984 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 409
Target Start/End: Complemental strand, 26175083 - 26174691
Alignment:
| Q |
8 |
ccttggacagaagcacaacgacgcttaaccattcataacagaagcttaacaacatagcttaaccatcatgaacagaagcacaagacaagaagag-caagg |
106 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| || ||||||| |||||| ||| | ||||||||||||||||||||| ||||||| | ||||| |
|
|
| T |
26175083 |
ccttggacagaagcacaacg---cttaaccattcatgacgaaagcttatcaacatggctgatccatcatgaacagaagcacaaaacaagaaaaaacaagg |
26174987 |
T |
 |
| Q |
107 |
atatctaaaatcaatgatgatatccaaaagaaaagaagtgcaagaaagggccaaagtttaccatggaaggaggtcatatgttgaacaaactgcacaccaa |
206 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||| |||||||||| | ||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26174986 |
atatccaaaatcaatgatgatatccaaaagaa-----gtgcaaggaagggccaaaatctacaatggaaggaggtcatatgttgaacaaacgtcacaccaa |
26174892 |
T |
 |
| Q |
207 |
aggtacaatgaagcaacaagaccaaggttccaaagttaa-aaaagagatgtcctccaatgccaagccgagacaagaaaaaccaaatgcaagccaatagat |
305 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||| ||| |||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26174891 |
aggtaccatgaagtgacaagaccaaggttccaaagataagaaaagagatgccctccgatgctgagccgagacaagaaaaaccaaatgcaagccaataga- |
26174793 |
T |
 |
| Q |
306 |
cagatgcatagccatgtgaggtgtcttcaaaccatagaaaacaaatccatgttgatgcattcaaaccataggccaaaacccatgcttccaataatgaagc |
405 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||| |
|
|
| T |
26174792 |
--gatgcatagccatgtgatatgtcttcaaaccatagaaaacaaatccatgttgatgcattcaaaccatagaccgaaaccaatgcttccaataatgaagc |
26174695 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 80 - 295
Target Start/End: Complemental strand, 4677489 - 4677270
Alignment:
| Q |
80 |
cagaagcacaagacaagaagagcaaggatatctaaaa-tcaatgatgatatccaaaagaaaa-gaagtgcaagaaagggccaaagtttaccatggaagga |
177 |
Q |
| |
|
||||||||||||| || ||| |||||||||| |||| |||||||||||||||||||||||| |||||||||| |||||||||| | ||| ||||||||| |
|
|
| T |
4677489 |
cagaagcacaagaaaaagagaacaaggatatccaaaaatcaatgatgatatccaaaagaaaaagaagtgcaaggaagggccaaaatctacaatggaagga |
4677390 |
T |
 |
| Q |
178 |
ggtcatatgttgaacaaactgcacaccaaaggtacaatgaagcaacaagaccaaggttccaa-agtta-aaaaagagatgtcctccaatgccaagccgag |
275 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||||||||| ||||||| |
|
|
| T |
4677389 |
ggtcatatgttgaataaacttcacaccaaaggtaccatgaagcaacaagaccaaggttccaagagatataaaaagagatgccctccaatgccgagccgag |
4677290 |
T |
 |
| Q |
276 |
acaagaaaaaccaaatgcaa |
295 |
Q |
| |
|
|||| || |||||||||||| |
|
|
| T |
4677289 |
acaaaaagaaccaaatgcaa |
4677270 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 352 - 419
Target Start/End: Complemental strand, 4677268 - 4677201
Alignment:
| Q |
352 |
ccatgttgatgcattcaaaccataggccaaaacccatgcttccaataatgaagctaaaacaaatccaa |
419 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
4677268 |
ccatgttgttgcattcaaaccataggccaaaaccaatgcctccaataatgaagctaaaacaaatccaa |
4677201 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 378
Target Start/End: Original strand, 29865095 - 29865164
Alignment:
| Q |
311 |
gcatagccatgtgaggtgtcttcaaaccatagaaaacaaatccatgttga--tgcattcaaaccataggc |
378 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||| | ||||||||||| ||| |||||||||||||| |
|
|
| T |
29865095 |
gcatagccatgtgatgtgtcttcaaaccataagaaaaatatccatgttgatgtgccttcaaaccataggc |
29865164 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1412 (Bit Score: 265; Significance: 1e-147; HSPs: 1)
Name: scaffold1412
Description:
Target: scaffold1412; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 8 - 381
Target Start/End: Original strand, 256 - 625
Alignment:
| Q |
8 |
ccttggacagaagcacaacgacgcttaaccattcataacagaagcttaacaacatagcttaaccatcatgaacagaagcacaagacaagaagagcaagga |
107 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
256 |
ccttggacagaagcacaatg---cttaaccattcatgacagaagcttatcaacatagcttaaccatcatgaacagaagcacaagacaagaaaaacaagga |
352 |
T |
 |
| Q |
108 |
tatctaaaatcaatgatgatatccaaaagaaaa--gaagtgcaagaaagggccaaagtttaccatggaaggaggtcatatgttgaacaaactgcacacca |
205 |
Q |
| |
|
|||| || | |||||||||||||||||| |||| |||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
353 |
tatccaacaacaatgatgatatccaaaaaaaaaaagaagcgcaaggaagggccaaagtttacaatggaaggaggtcatatgttgaacaaactgcacacca |
452 |
T |
 |
| Q |
206 |
aaggtacaatgaagcaacaagaccaaggttccaaagttaaaaaagagatgtcctccaatgccaagccgagacaagaaaaaccaaatgcaagccaatagat |
305 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
453 |
aaggtaccatgaagcaacaagaccaaggttccaaagttaaaaaagagatgccctccaatgccgagccaagacaagaaaaaccaaatgcaagccaatag-- |
550 |
T |
 |
| Q |
306 |
cagatgcatagccatgtgaggtgtcttcaaaccatagaaaacaaatccatgttgatgcattcaaaccataggccaa |
381 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
551 |
-agatgcatagccatgtgatgtgtcttcaaaccatagaaaacaaatccacgttgatgcattcaaaccataggccaa |
625 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 265; Significance: 1e-147; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 8 - 381
Target Start/End: Original strand, 145115 - 145484
Alignment:
| Q |
8 |
ccttggacagaagcacaacgacgcttaaccattcataacagaagcttaacaacatagcttaaccatcatgaacagaagcacaagacaagaagagcaagga |
107 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
145115 |
ccttggacagaagcacaatg---cttaaccattcatgacagaagcttatcaacatagcttaaccatcatgaacagaagcacaagacaagaaaaacaagga |
145211 |
T |
 |
| Q |
108 |
tatctaaaatcaatgatgatatccaaaagaaaa--gaagtgcaagaaagggccaaagtttaccatggaaggaggtcatatgttgaacaaactgcacacca |
205 |
Q |
| |
|
|||| || | |||||||||||||||||| |||| |||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
145212 |
tatccaacaacaatgatgatatccaaaaaaaaaaagaagcgcaaggaagggccaaagtttacaatggaaggaggtcatatgttgaacaaactgcacacca |
145311 |
T |
 |
| Q |
206 |
aaggtacaatgaagcaacaagaccaaggttccaaagttaaaaaagagatgtcctccaatgccaagccgagacaagaaaaaccaaatgcaagccaatagat |
305 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
145312 |
aaggtaccatgaagcaacaagaccaaggttccaaagttaaaaaagagatgccctccaatgccgagccaagacaagaaaaaccaaatgcaagccaatag-- |
145409 |
T |
 |
| Q |
306 |
cagatgcatagccatgtgaggtgtcttcaaaccatagaaaacaaatccatgttgatgcattcaaaccataggccaa |
381 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
145410 |
-agatgcatagccatgtgatgtgtcttcaaaccatagaaaacaaatccacgttgatgcattcaaaccataggccaa |
145484 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 8 - 381
Target Start/End: Original strand, 6823528 - 6823896
Alignment:
| Q |
8 |
ccttggacagaagcacaacgacgcttaaccattcataacagaagcttaacaacatagcttaaccatcatgaacagaagcacaagacaagaagagcaagga |
107 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
6823528 |
ccttggacagaagcacaacg---cttaaccattcatgccagaagcttatcaacatagcttaaccatcatgaacagaagcacaagacaagaaaaacaagga |
6823624 |
T |
 |
| Q |
108 |
tatctaaaatcaatgatgatatccaaaagaaaa-gaagtgcaagaaagggccaaagtttaccatggaaggaggtcatatgttgaacaaactgcacaccaa |
206 |
Q |
| |
|
|||| || | ||||||||||||| |||| |||| |||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6823625 |
tatccaacaacaatgatgatatctaaaaaaaaaagaagcgcaaggaagggccaaagtttacaatggaaggaggtcatatgttgaacaaactgcacaccaa |
6823724 |
T |
 |
| Q |
207 |
aggtacaatgaagcaacaagaccaaggttccaaagttaaaaaagagatgtcctccaatgccaagccgagacaagaaaaaccaaatgcaagccaatagatc |
306 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6823725 |
agataccatgaagcaacaagaccaaggttccaaagttaaaaaagagatgccctccaatgccgagccgagacaagaaaaaccaaatgcaagccaatag--- |
6823821 |
T |
 |
| Q |
307 |
agatgcatagccatgtgaggtgtcttcaaaccatagaaaacaaatccatgttgatgcattcaaaccataggccaa |
381 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6823822 |
agatgcatagccatgtgatgtgtcttcaaaccatagaaaacaaatccacgttgatgcattcaaaccataggccaa |
6823896 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 295
Target Start/End: Original strand, 9906289 - 9906572
Alignment:
| Q |
8 |
ccttggacagaagcacaacgacgcttaaccattcataacagaagcttaacaacatagcttaaccatcatgaacagaagcacaagacaagaagagcaagga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9906289 |
ccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccatcatgaacagaagcacaagacaagaagagtaagga |
9906388 |
T |
 |
| Q |
108 |
tatctaaaatcaatgatgatatccaaaagaaaagaagtgcaagaaagggccaaagtttaccatggaaggaggtcatatgttgaacaaactgcacaccaaa |
207 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9906389 |
tatccaaaatcaatgatgatatccaaaagaaaa--agtgcaaggaagggccaaagtttacaatggaaggaggtcatatgttgaacaaactgcacaccaaa |
9906486 |
T |
 |
| Q |
208 |
ggtacaatgaagcaacaagaccaaggttccaaagttaaaaaagagatgtcctccaatgccaagccgagacaagaaaaaccaaatgcaa |
295 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| ||||||||||||| |
|
|
| T |
9906487 |
ggtaccatgaagcaacaagaccaaggttccaaagttaaaaaagagatgccctccaatgccgagctgagacaag--aaaccaaatgcaa |
9906572 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 295
Target Start/End: Original strand, 18703500 - 18703783
Alignment:
| Q |
13 |
gacagaagcacaacgacgcttaaccattcataacagaagcttaacaacatagcttaaccatcatgaacagaagcacaagacaagaagagcaaggatatct |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| || |||||| |
|
|
| T |
18703500 |
gacagaagcacaacgacgcttaaccattcatgacagaagcttatcaacatagcttaaccatcatgaacagaaacacaagacaagaagagtaaagatatcc |
18703599 |
T |
 |
| Q |
113 |
aaaatcaatgatgatatccaaaagaaaa-gaagtgcaagaaagggccaaagtttaccatggaaggaggtcatatgttgaacaaactgcacaccaaaggta |
211 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |||||||||||| ||| |||||| |||||||||||||||||||||| |||||||||| || |
|
|
| T |
18703600 |
aaaatcaatgatgatatccaaaagaaaaagaagtgcaaggaagggccaaagtctacaatggaatgaggtcatatgttgaacaaacttcacaccaaagata |
18703699 |
T |
 |
| Q |
212 |
caatgaagcaacaagaccaaggttccaaagttaaaaaagagatgtcctccaatgccaagccgagacaagaaaaaccaaatgcaa |
295 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18703700 |
ccatgaagcaacaagaccaaggttccaaagataaaaaagagatgccctccaatgccgagccgagacaagaaaaaccaaatgcaa |
18703783 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 307 - 419
Target Start/End: Original strand, 18703837 - 18703949
Alignment:
| Q |
307 |
agatgcatagccatgtgaggtgtcttcaaaccatagaaaacaaatccatgttgatgcattcaaaccataggccaaaacccatgcttccaataatgaagct |
406 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||| |
|
|
| T |
18703837 |
agatgcatagccatgtgatgtgtcttcaaaccataaaaaacaaatccatgttgatgcattcaaaccataggccaaaaccaatgcctctaataatgaagct |
18703936 |
T |
 |
| Q |
407 |
aaaacaaatccaa |
419 |
Q |
| |
|
||||||||||||| |
|
|
| T |
18703937 |
aaaacaaatccaa |
18703949 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 35267973 - 35268063
Alignment:
| Q |
9 |
cttggacagaagcacaacgacgcttaaccattcataacagaagcttaacaacatagcttaaccatcatgaacagaagcacaagacaagaag |
99 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35267973 |
cttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacacaagaag |
35268063 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 307 - 383
Target Start/End: Original strand, 9906628 - 9906705
Alignment:
| Q |
307 |
agatgcatagccatgtgaggtgtcttcaaaccataga-aaacaaatccatgttgatgcattcaaaccataggccaaaa |
383 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9906628 |
agatgcatagccatgtgatatgtcttcaaaccatagagaaacaaatccatgttgatgcattcaaaccaaaggccaaaa |
9906705 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 4e-89; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 8 - 263
Target Start/End: Original strand, 42657275 - 42657527
Alignment:
| Q |
8 |
ccttggacagaagcacaacgacgcttaaccattcataacagaagcttaacaacatagcttaaccatcatgaacagaagcacaagacaagaagagcaagga |
107 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||| || ||||||||||||||||||||||||||||| |||||||||||| | |||||| |
|
|
| T |
42657275 |
ccttggacagaagcacaacg---cttaaccattcatgacagaagcctatcaacatagcttaaccatcatgaacagaagtacaagacaagaaaa-caagga |
42657370 |
T |
 |
| Q |
108 |
tatctaaaatcaatgatgatatccaaaagaaaa-gaagtgcaagaaagggccaaagtttaccatggaaggaggtcatatgttgaacaaactgcacaccaa |
206 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| ||||||| || |||||||||||||||| |||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
42657371 |
tatccaaaatcaatgatgatatccaaaacaaaaagaagtgctaggaagggccaaagtttacgatggaaggaggtcatatgttgatcaaacttcacaccaa |
42657470 |
T |
 |
| Q |
207 |
aggtacaatgaagcaacaagaccaaggttccaaagttaaaaaagagatgtcctccaa |
263 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
42657471 |
aggtaccatgaagcaacaagaccaaggttccaaagataaaaaagagatgccctccaa |
42657527 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 10745273 - 10745186
Alignment:
| Q |
8 |
ccttggacagaagcacaacgacgcttaaccattcataacagaagcttaacaacatagcttaaccatcatgaacagaagcacaagacaa |
95 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| ||||| |||| |
|
|
| T |
10745273 |
ccttggatagaagcacaacaacacttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaatcacaatacaa |
10745186 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 4607036 - 4606961
Alignment:
| Q |
8 |
ccttggacagaagcacaacgacgcttaaccattcataacagaagcttaacaacatagcttaaccatcatgaacagaagc |
86 |
Q |
| |
|
|||||| |||||||||||| |||||||||||| ||| | |||||| |||||| |||||||||||||| |||||||| |
|
|
| T |
4607036 |
ccttggccagaagcacaacaacgcttaaccatccatgatagaagc---acaacaaggcttaaccatcatggacagaagc |
4606961 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 2e-72; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 16 - 295
Target Start/End: Complemental strand, 5444397 - 5444117
Alignment:
| Q |
16 |
agaagcacaacgacgcttaaccattcataacagaagcttaacaacatagcttaaccatcatgaacagaagcacaagacaagaagagcaaggatatctaaa |
115 |
Q |
| |
|
|||||||||| |||||||||||||||| || ||||| || |||||| ||| | |||||||||||||||||| |||||||||| | |||||||||| ||| |
|
|
| T |
5444397 |
agaagcacaataacgcttaaccattcatgacggaagcgtatcaacatggctgatccatcatgaacagaagcagaagacaagaaaa-caaggatatccaaa |
5444299 |
T |
 |
| Q |
116 |
atcaatgatgatatccaaaagaaaa-gaagtgcaagaaagggccaaagtttaccatggaaggaggtcatatgttgaacaaactgcacaccaaaggtacaa |
214 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||| | | | |||||||||| |||||||||||||||||| ||||||||||| || | |
|
|
| T |
5444298 |
atcaatgatgatatccaaaagaaaaagaagtgcaaggaagggccaaaatcttcaatggaaggagatcatatgttgaacaaacttcacaccaaaggcacca |
5444199 |
T |
 |
| Q |
215 |
tgaagcaacaagaccaaggttccaa-agtta-aaaaagagatgtcctccaatgccaagccgagacaagaaaaaccaaatgcaa |
295 |
Q |
| |
|
||||||||||||||||||||||||| || || ||||||||||| ||||||||||| || |||||||| || |||||||||||| |
|
|
| T |
5444198 |
tgaagcaacaagaccaaggttccaagagatataaaaagagatgccctccaatgccgagtcgagacaa-aataaccaaatgcaa |
5444117 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 309 - 381
Target Start/End: Complemental strand, 5444067 - 5443995
Alignment:
| Q |
309 |
atgcatagccatgtgaggtgtcttcaaaccatagaaaacaaatccatgttgatgcattcaaaccataggccaa |
381 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5444067 |
atgcatggccatgtgatgtgtcttcaaaccatagaaaacaaatccatgttgatgcattcaaaccataggccaa |
5443995 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 11814788 - 11814703
Alignment:
| Q |
10 |
ttggacagaagcacaacgacgcttaaccattcataacagaagcttaacaacatagcttaaccatcatgaacagaagcacaagacaa |
95 |
Q |
| |
|
||||||||||||||||| |||| |||||||||| || |||| || |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11814788 |
ttggacagaagcacaacaacgccaaaccattcatgacgaaagcctatcaacatggcttaaccatcatgaacagaagcacaagacaa |
11814703 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 55850254 - 55850339
Alignment:
| Q |
13 |
gacagaagcacaacgacgcttaaccattcataacagaagcttaacaacatagcttaaccatcatgaacagaagcacaagacaagaa |
98 |
Q |
| |
|
||||||||| |||| |||||||||||||||| | ||||| || |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
55850254 |
gacagaagctcaacaacgcttaaccattcatgatggaagcatatcaacatgtcttaaccatcatgaacagaagcacaagacaagaa |
55850339 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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