View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk392-LTR4-TNT-insertion-5 (Length: 630)
Name: Tnk392-LTR4-TNT-insertion-5
Description: Tnk392-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk392-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 173 - 620
Target Start/End: Original strand, 27194551 - 27194999
Alignment:
| Q |
173 |
attcattttgtttgagtataaattattacattgaccagagttgactaagttttcctgtggtttattccagtgtttttgttattggacattgtcgtttatg |
272 |
Q |
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| T |
27194551 |
attcattttgtttaagtg-aaattattacattgaccagagttgactaagttttccagtggtttattctagtgtttttcttattggacattgtggtttatg |
27194649 |
T |
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| Q |
273 |
a--gttgtttgaagtgttagttttatttgtacttatactgatggaatattgtggtgctatttcttatattttgaaattcacaggttaaaattgatagttt |
370 |
Q |
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| T |
27194650 |
acagttatttgaagtggtggttttatttgtacttataccgatggaatattgtggtgctatttcttatattttgaaattcacaggttaaaattgatagctt |
27194749 |
T |
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| Q |
371 |
gaagggaaagaaacttggtttctatttttcagcatcatggtgtggtccgtgtcgaggattcactccaacgttggtggaggtctacgatgaactctctcca |
470 |
Q |
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| T |
27194750 |
gaagggaaagaaacttggtttctatttttcagcatcatggtgtggtccgtgtcgaggattcactccaaagttggtggaggtgtacgatgaactctctcca |
27194849 |
T |
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| Q |
471 |
aagggtgactttgaggttgtttttgtctcggctgatgaagatgatgaggcttttaaaagctacttttccaagatgccatggttggctatcccgttttctg |
570 |
Q |
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| T |
27194850 |
aatggtgaatttgaggttgtttttgtctcagccgataaagatgatgaggcttttaagagctacttttccaagatgccatggctagctatcccattttctg |
27194949 |
T |
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| Q |
571 |
attctgagacacgcagtcgccttgatgaattgtttcatgtcaacggaatt |
620 |
Q |
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| T |
27194950 |
attcagagacacgcggtcgccttgatgaattgtttcatgtcaacggaatt |
27194999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 334 - 610
Target Start/End: Original strand, 27209942 - 27210218
Alignment:
| Q |
334 |
ttatattttgaaattcacaggttaaaattgatagtttgaagggaaagaaacttggtttctatttttcagcatcatggtgtggtccgtgtcgaggattcac |
433 |
Q |
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| T |
27209942 |
ttatatcttgagattcacaggtaaaaattgatagcttgaagggaaagaaacttggtttttatttttcagcatcatggtgtggtccgtgtcgatcattcac |
27210041 |
T |
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| Q |
434 |
tccaacgttggtggaggtctacgatgaactctctccaaagggtgactttgaggttgtttttgtctcggctgatgaagatgatgaggcttttaaaagctac |
533 |
Q |
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| T |
27210042 |
tccaacgttggtggaggtgtacaatgaactctctcccaagggtgactttgaggttgtttatgtctcacgtgataaagatgatgagacctttaacaactac |
27210141 |
T |
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| Q |
534 |
ttttccaagatgccatggttggctatcccgttttctgattctgagacacgcagtcgccttgatgaattgtttcatgt |
610 |
Q |
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| T |
27210142 |
ttttccaagatgccatggctggctatcccattttctgactcagagatacgcattcgcctcaaagaattgtttcatgt |
27210218 |
T |
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