View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk442-LTR4-TNT-insertion-1 (Length: 181)
Name: Tnk442-LTR4-TNT-insertion-1
Description: Tnk442-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk442-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr6 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 6895510 - 6895670
Alignment:
| Q |
15 |
atcaaacacatcattaatatatgttttccaagataagagaatcaaatcttgtagccaatagccatatatataaactcaatataatattttgtaaagaatg |
114 |
Q |
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| T |
6895510 |
atcaaacacatcattaatatatgttttccaagataagagaatcaaattttgtagccaatagccatatatataaactcaatataatattttgtaaagaatg |
6895609 |
T |
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| Q |
115 |
tgtggtataggaggggcagtacgtactagatatatttggtcccta--tctgtttcaattgg |
173 |
Q |
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| T |
6895610 |
tgtggtataggaggggcagtacgtactagatatatttggtccctatctctgtttcaattgg |
6895670 |
T |
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