View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Tnk442-LTR4-TNT-insertion-13 (Length: 95)

Name: Tnk442-LTR4-TNT-insertion-13
Description: Tnk442-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Tnk442-LTR4-TNT-insertion-13
Tnk442-LTR4-TNT-insertion-13
[»] chr7 (1 HSPs)
chr7 (8-87)||(2684535-2684614)
[»] chr1 (1 HSPs)
chr1 (8-47)||(33218406-33218445)
[»] chr4 (1 HSPs)
chr4 (8-47)||(4505810-4505849)
[»] chr3 (1 HSPs)
chr3 (20-47)||(47410526-47410553)


Alignment Details
Target: chr7 (Bit Score: 68; Significance: 6e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 6e-31
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 2684614 - 2684535
Alignment:
Q  8 ataataatgctcttttattggtgtcattcaaaaagataagtaaatttaatttttgagcaaactactggtgccaaggaatt 87  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2684614 ataataatgctcttttattgatgtcactcaaaaagataagtaaatttaatttttgagcaaactactagtgccaaggaatt 2684535  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 33218406 - 33218445
Alignment:
Q  8 ataataatgctcttttattggtgtcattcaaaaagataag 47  Q
    |||| |||||| ||||||||||||||||||||||||||||    
T  33218406 ataagaatgctattttattggtgtcattcaaaaagataag 33218445  T

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Target: chr4 (Bit Score: 28; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 4505810 - 4505849
Alignment:
Q  8 ataataatgctcttttattggtgtcattcaaaaagataag 47  Q
    |||||||| || |||| |||||||||||||||||||||||    
T  4505810 ataataatcctattttgttggtgtcattcaaaaagataag 4505849  T

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Target: chr3 (Bit Score: 28; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 47
Target Start/End: Complemental strand, 47410553 - 47410526
Alignment:
Q  20 ttttattggtgtcattcaaaaagataag 47  Q
    ||||||||||||||||||||||||||||    
T  47410553 ttttattggtgtcattcaaaaagataag 47410526  T

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