View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Tnk442-LTR4-TNT-insertion-14 (Length: 340)
Name: Tnk442-LTR4-TNT-insertion-14
Description: Tnk442-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk442-LTR4-TNT-insertion-14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 173 - 329
Target Start/End: Original strand, 39869293 - 39869449
Alignment:
| Q |
173 |
ttatgcaccatataacttcaagaaattttctaacattaaatattaccaattattcatgaaatttaatatcaagtatcccaacatacatataaacacatac |
272 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||| ||||||| || ||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
39869293 |
ttatgcaccatacaacttcaagaatttttctaacattaaatattatcaattatccacgaaatttaatatcaagtatcctaacatacatatcaacacatac |
39869392 |
T |
|
| Q |
273 |
atatttttagttccacaaaaatcattatagaaaagtgtatagacaattaaactataa |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
39869393 |
atatttttagttccacaaaaatcattatagaaaagtgtagaatcaattaaactataa |
39869449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 176 - 310
Target Start/End: Original strand, 33162122 - 33162256
Alignment:
| Q |
176 |
tgcaccatataacttcaagaaattttctaacattaaatattaccaattattcatgaaatttaatatcaagtatcccaacatacatataaacacatacata |
275 |
Q |
| |
|
|||||| |||||| ||||||| |||||||| ||||||||||| |||||||||| |||||||||||||||||||| ||||||||||| || |||||| || |
|
|
| T |
33162122 |
tgcaccgtataacatcaagaatttttctaaaattaaatattatcaattattcacaaaatttaatatcaagtatcctaacatacatatgaagacatactta |
33162221 |
T |
|
| Q |
276 |
tttttagttccacaaaaatcattatagaaaagtgt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
33162222 |
tttttagttccacaaaaatcattatagaaaagtgt |
33162256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 24889204 - 24889121
Alignment:
| Q |
256 |
tacatataaacacatacatatttttagttccacaaaaatcattatagaaaagtgtatagacaattaaactataactggatttta |
339 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||| |
|
|
| T |
24889204 |
tacatatgaacacatacatatttttagttccacaaaaatcattatagaaaagtgtggagtcaattaaactataactggttttta |
24889121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 233 - 311
Target Start/End: Complemental strand, 22857340 - 22857263
Alignment:
| Q |
233 |
atttaatatcaagtatcccaacatacatataaacacatacatatttttagttccacaaaaatcattatagaaaagtgta |
311 |
Q |
| |
|
||||||||||||| |||| |||||| |||| ||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
22857340 |
atttaatatcaagaatcctaacata-atatgaacacatacatatttttagctccacaaaaattattatagaaaagtgta |
22857263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University