View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Tnk442-LTR4-TNT-insertion-2 (Length: 205)

Name: Tnk442-LTR4-TNT-insertion-2
Description: Tnk442-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Tnk442-LTR4-TNT-insertion-2
Tnk442-LTR4-TNT-insertion-2
[»] chr3 (2 HSPs)
chr3 (9-196)||(45382838-45383024)
chr3 (136-196)||(50084778-50084840)
[»] chr5 (1 HSPs)
chr5 (143-196)||(27803034-27803089)
[»] chr1 (1 HSPs)
chr1 (142-196)||(31686728-31686784)
[»] chr8 (2 HSPs)
chr8 (146-196)||(40688136-40688188)
chr8 (136-192)||(31344431-31344487)
[»] chr2 (1 HSPs)
chr2 (136-196)||(9151357-9151417)


Alignment Details
Target: chr3 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 45382838 - 45383024
Alignment:
Q  9 gacatgccttcgatcagaaatgtctgtgctacaaagtccattatttaccaattagtcacttcctttgctttctccacttctatgaaacttaattgtcata 108  Q
    ||||||||||||||||||| | | ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  45382838 gacatgccttcgatcagaagtat-tgtgctacaaagttcattatttaccaattagtcaattcctttgctttctccacttctatgaaactt-attgtcata 45382935  T
Q  109 cagaattacggcttannnnnnnnnnnnctaaa-ttttgtgttacttttacttgttaacaatgagaaaagactcttgaagtgaacaattg 196  Q
    |||||||||||||||            ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45382936 cagaattacggcttattttttatttttctaaatttttgtgttacttttacttgttaacaatgagaaaagactcttgaagtgaataattg 45383024  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 50084778 - 50084840
Alignment:
Q  136 ctaaattttgtgttacttttacttgttaacaatgagaaa--agactcttgaagtgaacaattg 196  Q
    ||||| ||||| ||| |||||||||||||||| ||||||  |||||||||| |||||||||||    
T  50084778 ctaaaatttgtattaattttacttgttaacaaggagaaaggagactcttgatgtgaacaattg 50084840  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 27803089 - 27803034
Alignment:
Q  143 ttgtgttacttttacttgttaacaatgagaaa--agactcttgaagtgaacaattg 196  Q
    |||||||| |||||||||||||||| ||||||  ||||||||||||||||||||||    
T  27803089 ttgtgttagttttacttgttaacaaggagaaaagagactcttgaagtgaacaattg 27803034  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 31686728 - 31686784
Alignment:
Q  142 tttgtgttacttttacttgttaacaatgagaaa--agactcttgaagtgaacaattg 196  Q
    ||||||||| |||||||||||||||| ||||||  ||||||||||||||||| ||||    
T  31686728 tttgtgttagttttacttgttaacaaggagaaaagagactcttgaagtgaacgattg 31686784  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 40688136 - 40688188
Alignment:
Q  146 tgttacttttacttgttaacaatgagaaa--agactcttgaagtgaacaattg 196  Q
    ||||| ||||||||| ||||||||||| |  ||||||||||||||||||||||    
T  40688136 tgttaattttacttggtaacaatgagatactagactcttgaagtgaacaattg 40688188  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 31344487 - 31344431
Alignment:
Q  136 ctaaattttgtgttacttttacttgttaacaatgagaaaagactcttgaagtgaaca 192  Q
    ||||| ||||||||| ||||||||  | |||| |||| |||||||||||||||||||    
T  31344487 ctaaagtttgtgttaattttacttcctgacaaagagataagactcttgaagtgaaca 31344431  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 9151417 - 9151357
Alignment:
Q  136 ctaaattttgtgttacttttacttgttaacaatgagaaaagactcttgaagtgaacaattg 196  Q
    ||||| ||||||||| |  ||| || ||| || ||||||||||||||||||||||||||||    
T  9151417 ctaaaatttgtgttattcctacatggtaataaagagaaaagactcttgaagtgaacaattg 9151357  T

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