View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk442-LTR4-TNT-insertion-4 (Length: 643)
Name: Tnk442-LTR4-TNT-insertion-4
Description: Tnk442-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk442-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 577; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 11 - 635
Target Start/End: Original strand, 1166898 - 1167522
Alignment:
| Q |
11 |
cctttaagtagtaatagtggataaagcctcaacttatatccattaagaaaaatagtctataacaacatcaataaatttaatttgacttggtcttggagga |
110 |
Q |
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| T |
1166898 |
ccttttagtagtaatagtggataaagcctcaacttatatctattaagaaaaatagtctataacaactacaataaatttaatttgacttggtcttggagga |
1166997 |
T |
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| Q |
111 |
attggtccaaggatatcactcccccaagttttgaaggtccatgtaatcactatgtgatatgaatgattggcaaacctctgatactctttgattctatgca |
210 |
Q |
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| T |
1166998 |
attggtccaacgatatcactcccccaagttttgaaggtccatgtaatcactatgtgatatgaatgattggtaaacctctgatactctttgattctttgca |
1167097 |
T |
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| Q |
211 |
caatttctttgcagtatgcttgtagggttggacaacaatatcctaacgtgaggactgaggacacttgaggccattgtcctagatttgatagtcattagcg |
310 |
Q |
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| T |
1167098 |
caatttctttgcagtatgcttgtagggttggacaacaatatcctaacgtgaggactgaggacacttgaggccattgtcctagatttgatagtcattagcg |
1167197 |
T |
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| Q |
311 |
gtgtaaaagtattttaattgttgtattgacacagagacatgcaatatttttaggcgttcaattgtcttctggttcttagttagggtttgcaagacagcaa |
410 |
Q |
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| T |
1167198 |
gtgtaaaaatattttaattgttgtattgacacagagacatgcaatatttttaggcgttcaattgtcttctggttcttagttagggtttgcaagacagcaa |
1167297 |
T |
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| Q |
411 |
gagtttgtggtaatataaacaaaaatgcatgaaagtaaggaaactttacaagctaaaagacttgtttgggttagacttcattaaatactcctaaattgta |
510 |
Q |
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| T |
1167298 |
gagtttgtggtaatataaacaaaaatgcataaaagtaaggaaactttacaagctaaaagacttatttgggttagacttcattaaatactcctaaattgta |
1167397 |
T |
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| Q |
511 |
tctttttgatcgattatataattttatattttcaattatatcttcacttgtcgcttttggttttcgtgtccgtaaaacgaagagaaatctatcgtacttt |
610 |
Q |
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| T |
1167398 |
tctttttgatcgattatataattttatattttcaattatatcttcacttgtcgcttttggttttcgtgtccgtgaaacgacgagaaatctatcgtacttt |
1167497 |
T |
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| Q |
611 |
taactacgaacgtctcactaaatta |
635 |
Q |
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| T |
1167498 |
taactacgaacgtctcactaaatta |
1167522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 562
Target Start/End: Original strand, 3923984 - 3924029
Alignment:
| Q |
517 |
tgatcgattatataattttatattttcaattatatcttcacttgtc |
562 |
Q |
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| T |
3923984 |
tgatcaattatatacttttagattttcaattatatctccacttgtc |
3924029 |
T |
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