View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk442-LTR4-TNT-insertion-6 (Length: 484)
Name: Tnk442-LTR4-TNT-insertion-6
Description: Tnk442-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk442-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 265 - 477
Target Start/End: Complemental strand, 31726125 - 31725916
Alignment:
| Q |
265 |
atatcacaagtacttacagactagcctaataataacttttagctcaagttatctcttaattaactgactaactaattaattagctatcaaccaactaact |
364 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31726125 |
atatcacaagtacttacagactagcctaataa---cttttagctcaagttatctcttaattaactgactaactagttaattagctatcaaccaactaact |
31726029 |
T |
|
| Q |
365 |
atttgttggggtccagccacagtgatgcaccgaatggaaatgttgaaatttcttctcccacatgtctataagcatcctcgcaatggtggttaatttgaaa |
464 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31726028 |
atttgttgggatccagccaccgtgatgcaccgaatggaaatgttgaaatttcttctcccacatgtctataagcatcctcgcaatggtggttaatttgaaa |
31725929 |
T |
|
| Q |
465 |
agcttggcaattg |
477 |
Q |
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||||||||||||| |
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| T |
31725928 |
agcttggcaattg |
31725916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 31726351 - 31726128
Alignment:
| Q |
9 |
tgtaaacttacagtacactctcaaaatattttgttcagaaaacatgtccgaaatnnnnnnntcaatacctcacagttcatttgcaaataaagaacacaca |
108 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31726351 |
tgtaaacttacagtacactctcaaaatattctgttcagaaaacatgtccgaaataaaaaaatcaatacctcacagttcatttgcaaataaagaacacaca |
31726252 |
T |
|
| Q |
109 |
tcctgcaatgtactttactacattttcattacaaagaacaatagacagctcaatatcatattgatattaggtaaaagtgcattcaatatgagaattaatg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31726251 |
tcctgcaatgtactttactacattttcattacaaagaacaatagacagctcaatatcatattgatattaggtaaaagtgcattcaatatgag----aatg |
31726156 |
T |
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| Q |
209 |
agagtttttaaatggtgaaatgtaaatt |
236 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
31726155 |
agagtttttaaatggtgaaatgtaaatt |
31726128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 31714338 - 31714265
Alignment:
| Q |
122 |
tttactacattttcattacaaagaacaatagacagctcaatatcatattgatattaggtaaaagtgcattcaat |
195 |
Q |
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||||||| ||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31714338 |
tttactatattttcattacaaagtgctattgacagctcaatatcatattgatattaggtaaaagtgcattcaat |
31714265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 31722787 - 31722703
Alignment:
| Q |
70 |
tcaatacctcacagttcatttgcaaataaagaacacacatcctgcaatgtactttactacattttcattacaaagaacaatagaca |
155 |
Q |
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|||||||| |||| |||||| ||||||||||| || |||||||||||||| ||||||||||||| ||| |||||||| ||||||| |
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| T |
31722787 |
tcaataccgcacatttcatt-gcaaataaagagcatacatcctgcaatgtgttttactacatttttatttcaaagaactatagaca |
31722703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 31011345 - 31011392
Alignment:
| Q |
70 |
tcaatacctcacagttcatttgcaaataaagaacacacatcctgcaatgt |
119 |
Q |
| |
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|||||| |||||| |||||||||||||||||| |||||||||||||||| |
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| T |
31011345 |
tcaataactcacatttcatttgcaaataaaga--acacatcctgcaatgt |
31011392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 44902618 - 44902672
Alignment:
| Q |
122 |
tttactacattttcattacaaagaacaatagacagctcaatatcatattgatatt |
176 |
Q |
| |
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|||||||||| ||||||||||||||| |||||| | |||||||||| ||||||| |
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| T |
44902618 |
tttactacatcttcattacaaagaactatagacggttcaatatcattctgatatt |
44902672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 436
Target Start/End: Original strand, 46626628 - 46626697
Alignment:
| Q |
367 |
ttgttggggtccagccacagtgatgcaccgaatggaaatgttgaaatttcttctcccacatgtctataag |
436 |
Q |
| |
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||||||| ||||| ||| ||||||||| ||||| ||||||||||||||||||||| ||| ||||||| |
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| T |
46626628 |
ttgttggcgtccaaccatagtgatgcattttatggagatgttgaaatttcttctcccatatgcctataag |
46626697 |
T |
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