View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk442-LTR4-TNT-insertion-7 (Length: 392)
Name: Tnk442-LTR4-TNT-insertion-7
Description: Tnk442-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk442-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 10 - 383
Target Start/End: Complemental strand, 54502277 - 54501905
Alignment:
| Q |
10 |
tataacattagcaaaggtgtttatctttnnnnnnnntgttatacttgtttgtaatagccatccaacgactcttccatcatcaaaccaagaggcttcacac |
109 |
Q |
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| T |
54502277 |
tataacattagcaaaggtgtttatctttaaaaaaa-tgttatacttgtttgcaatagccatccaacgactcttccatcatcaaaccaagaggctccacac |
54502179 |
T |
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| Q |
110 |
ccaacatatataaaagacatcattcaccgtcacatcattgagcgattcgattaagaaattgtcaaggtttgagaaaccgatgaaagaatataaatatatt |
209 |
Q |
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| T |
54502178 |
ccaacatatataaaagacatcattcaccgtcacatcattgagcgattcaattaagaaattgtcaaggtttgggaaaccgatgaaagaatataaatatatt |
54502079 |
T |
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| Q |
210 |
ttttgaaaagaggtcttcaccgaagaagcataatagacaaaagtaagtactacagattttcacaagtgttatggttaacaaaggcaggtgacactacaat |
309 |
Q |
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| T |
54502078 |
ttctgaaaagaggtcttcaccgaagaagcatagtagacaaaagtaagtactacaaattttcacaagtgttatggttaacaaaggcaggtgacactacaat |
54501979 |
T |
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| Q |
310 |
ggtcgcgatcaaggaaagaaatgaagaaagcgaagacaatggagattaggtggccagagctctaataccaattg |
383 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
54501978 |
ggtcgcgatcaaggaaagaaatgaagaaagcggagacaatggagtttaggtggccacagctctaataccaattg |
54501905 |
T |
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