View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk442-LTR4-TNT-insertion-8 (Length: 559)
Name: Tnk442-LTR4-TNT-insertion-8
Description: Tnk442-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk442-LTR4-TNT-insertion-8 |
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Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 10 - 550
Target Start/End: Original strand, 41582875 - 41583410
Alignment:
| Q |
10 |
aggaaaaactaaatttagaggccaatttaattgacacatttaggttatctaccaatttgttagcatccaattcaaaaataatatttttcaaacccaaaga |
109 |
Q |
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| T |
41582875 |
aggaaaaaccaaatttagaggccaatttaattggcacatttaggttatctaccaatttgttagcatccaattcaaaaataatatttttcaatcccaaaga |
41582974 |
T |
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| Q |
110 |
atcaatccccttcacagatacaagacgaccacaagcctctcttctattactgacaggtgaggttgtattcacttagatctcacctagatagggtttccct |
209 |
Q |
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| T |
41582975 |
atcaatccccttcacagatacaagacgaccacaaggttctcttctattactgacaggtgaggttgtattcacttagatctcacctagatagggtttccct |
41583074 |
T |
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| Q |
210 |
ttaaatttcgtatacacatgtgccaaaatctcgtagctcatgcttacgagaaaaattagtcatctacattcgaatttaagttccatttcggagatggcta |
309 |
Q |
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| T |
41583075 |
ttaaaaaatttatacacatgtgccaaaatc--gtagctcatgcttacgagaaaaattagtcatctacattcgaatttaagttccagttcggagatggcta |
41583172 |
T |
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| Q |
310 |
ccacgacgagaccgatactagtgggtgcagatggaatgactggagacgagaattgtgatctggaagccactcgtcaagaaccattttatctatccataac |
409 |
Q |
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| T |
41583173 |
ccacgacgagaccgatattagtgggtgcagatggaatgactggagacgagaattgtgatctagaagccactcgtcaagaaccattttatctatccataac |
41583272 |
T |
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| Q |
410 |
atgtcgatcgaggaatcaactttacccttcccaaaaagtttgttttgcattgaccaaaagctnnnnnnnncattgggagcagttgagggattccataact |
509 |
Q |
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| T |
41583273 |
atgtcgatcgaggaatcaactttacccttcccaaaaagtttgttttgcattgaccaaaagct--aaaaaacattgggagcagtt-agggattccataact |
41583369 |
T |
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| Q |
510 |
gcggcgagaaattccaaaagagagtcaaaatggaccaattg |
550 |
Q |
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| T |
41583370 |
gcggtgagaaattccaaaagagagtcaaaatggaccaattg |
41583410 |
T |
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