View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk442-LTR4-TNT-insertion-9 (Length: 280)
Name: Tnk442-LTR4-TNT-insertion-9
Description: Tnk442-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk442-LTR4-TNT-insertion-9 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 107 - 270
Target Start/End: Complemental strand, 8149523 - 8149360
Alignment:
| Q |
107 |
atattatcattgtgtgtttttattcttttctaatcctcaattggagctacataatcctctgttttcgtaaagaaacaaacaaattgaactaaagcaaggg |
206 |
Q |
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| T |
8149523 |
atattatcattgtgtgtttttattcttttctaatcctcaattggagctacataatcctctgttttcgtaaagaaacaaacaaattgaactaaagcaaggg |
8149424 |
T |
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| Q |
207 |
tcatgggagcattcaacgtacacaatgacacttttacagataaacaaatcaatattacacatta |
270 |
Q |
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| T |
8149423 |
tcatgggagcattcaacgtacacaatgacacttttacagataaacaaatcaatattacacatta |
8149360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 8149662 - 8149562
Alignment:
| Q |
9 |
taatgaatcattgtatattgactctgttgagaagagctacctatgcttagagaccgttttggtgtctttgcagttccatgccattttaagctaagcatat |
108 |
Q |
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| T |
8149662 |
taatgaatcattgtatattgactctgttgagaagagctacctatgcttagagaccgttttcgtgtctttgcggttccatgccattttaagctaagcatat |
8149563 |
T |
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| Q |
109 |
a |
109 |
Q |
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| T |
8149562 |
a |
8149562 |
T |
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