View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Tnk443-LTR4-TNT-insertion-10 (Length: 485)
Name: Tnk443-LTR4-TNT-insertion-10
Description: Tnk443-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk443-LTR4-TNT-insertion-10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 10 - 476
Target Start/End: Complemental strand, 2450462 - 2449996
Alignment:
| Q |
10 |
tagtacccttctgttaaccaaacgaaaatcgtttcttataatgtctggtgaaccatctactctttgttgcttatgaaagggaagaatgatgactgcggct |
109 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2450462 |
tagtacccttttgttaaccaaacgaaaatcgtttcttataatgtctagtgaaccgtctactctttgttgcttatgaaatggaagaatgatgactgcggct |
2450363 |
T |
|
| Q |
110 |
ctctttctatcagcagttgtacagatgtcttcatgaatgttcgccatcgatgaaattgctatcattggccggacacaaacttggcttagtttttggtaag |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
2450362 |
ctctttctatcagcagttgtacagatgtcttcatgaatgttcgccatcgatgaaattgctatcattggccggacaaacacttggcttagtttttggtaag |
2450263 |
T |
|
| Q |
210 |
cctcgaacgccacaataacatggagagaatctccatggcgacctttatcccaaaacggcaacccattttgtcttaccttttgtgccattagtatcgatga |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2450262 |
cctcgaacgccacaataacatggagagaatctccatggcgacctttatcccaaaacggcaacccattttgtcttaccttttgtgccattagtatcgatga |
2450163 |
T |
|
| Q |
310 |
ggacctctcacaaaattctttaaggtgcattgcatagacacaaagtgcgtcacgcttcttgattcctcttgaagcctcgatcaagtttatcaatgatgga |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2450162 |
ggacctctcacaaaattctttaaggtgcattgcatagacacaaagtgcgtcatgcttcttgattcctcttgaagcctcgatcaagtttatcaatgatgga |
2450063 |
T |
|
| Q |
410 |
atattccttgaaccatggaaacaggcaagaatccttagttgcccgtctgcatttttcctttcaattg |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2450062 |
atattccttgaaccatggaaacaggcaagaatccttagttgcccgtctgcatttttcctttcaattg |
2449996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 11 - 476
Target Start/End: Complemental strand, 2461477 - 2461012
Alignment:
| Q |
11 |
agtacccttctgttaaccaaacgaaaatcgtttcttataatgtctggtgaaccatctactctttgttgcttatgaaagggaagaatgatgactgcggctc |
110 |
Q |
| |
|
||||||||| ||||||||| |||||||| |||||||||||| || ||||||| |||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2461477 |
agtacccttttgttaaccagtcgaaaatcatttcttataatgcctagtgaaccgtctaatctttgttgcttatgaaatggaagaatgatgactgcggctc |
2461378 |
T |
|
| Q |
111 |
tctttctatcagcagttgtacagatgtcttcatgaatgttcgccatcgatgaaattgctatcattggccggacacaaacttggcttagtttttggtaagc |
210 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
2461377 |
tctttctatcagcagttgcacaaatgtcttcatgaatgttcgccattgatgaaattgctatcattggccggacacacacttgacttagtttttggtaagc |
2461278 |
T |
|
| Q |
211 |
ctcgaacgccacaataacatggagagaatctccatggcgacctttatcccaaaacggcaacccattttgtcttaccttttgtgccattagtatcgatgag |
310 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2461277 |
ctcaaacgccacaataacatggacagaatctccatggcgacctttatcccaaaacggcaacccattttgtcttaccttttgtgccattagtatcgatgag |
2461178 |
T |
|
| Q |
311 |
gacctctcacaaaattctttaaggtgcattgcatagacacaaagtgcgtcacgcttcttgattcctcttgaagcctcgatcaagtttatcaatgatggaa |
410 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2461177 |
gacctctcacaaaattctttaagatgcatcgcatagacacaaagtgcgtcatgcttcttgattcctcttgaagcctcgatcaagtttatcaccgatggaa |
2461078 |
T |
|
| Q |
411 |
tattccttgaaccatggaaacaggcaagaatccttagttgcccgtctgcatttttcctttcaattg |
476 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
2461077 |
tattccttgaaccatgaaaacaggcaagaatcctcagttggccgtctgcatttttcctttcaattg |
2461012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 473
Target Start/End: Complemental strand, 2445700 - 2445238
Alignment:
| Q |
11 |
agtacccttctgttaaccaaacgaaaatcgtttcttataatgtctggtgaaccatctactctttgttgcttatgaaagggaagaatgatgactgcggctc |
110 |
Q |
| |
|
||||||||| ||||||| || |||||||| |||||| ||| |||| |||||||||||| |||||||||| |||| || || ||||||||||||||||||| |
|
|
| T |
2445700 |
agtacccttttgttaacaaatcgaaaatcatttcttgtaacgtctagtgaaccatctaatctttgttgcatatggaatgggagaatgatgactgcggctc |
2445601 |
T |
|
| Q |
111 |
tctttctatcagcagttgtacagatgtcttcatgaatgttcgccatcgatgaaattgctatcattggccggacacaaacttggcttagtttttggtaagc |
210 |
Q |
| |
|
||||||| ||||| || | ||| |||||||| |||||||| ||||| || || ||||||| |||||| || ||||||||||| |||||||| |||||||| |
|
|
| T |
2445600 |
tctttctttcagcggtagcacatatgtcttcgtgaatgttagccattgaggagattgctaccattggacgaacacaaacttgacttagtttctggtaagc |
2445501 |
T |
|
| Q |
211 |
ctcgaacgccacaataacatggagagaatctccatggcgacctttatcccaaaacggcaacccattttgtcttaccttttgtgccattagtatcgatgag |
310 |
Q |
| |
|
||| || ||||||||||||||| ||||||| || || ||||||||| |||||| |||||||| |||| |||||| |||||| ||||||||||||||||| |
|
|
| T |
2445500 |
ctcaaatgccacaataacatggtcagaatctgcacggtgacctttattccaaaatggcaacccgttttttcttactttttgtaccattagtatcgatgag |
2445401 |
T |
|
| Q |
311 |
gacctctcacaaaattctttaaggtgcattgcatagacacaaagtgcgtcacgcttcttgattcctcttgaagcctcgatcaagtttatcaatgatggaa |
410 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
2445400 |
gatctctcggaaaattctttaaggtgcattgcatacacacaaagtgcgtcgcgcttcttgattcctcttgaagcctcgatcaagtttatcaccgacggaa |
2445301 |
T |
|
| Q |
411 |
tattccttgaaccatggaaacaggcaagaatccttagttgcccgtctgcatttttcctttcaa |
473 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||| | | | |||||||||||||||||||| |
|
|
| T |
2445300 |
tattccttgcaccatggaagcaggcaagaatcctcaactcgctgtctgcatttttcctttcaa |
2445238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University