View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Tnk443-LTR4-TNT-insertion-11 (Length: 772)

Name: Tnk443-LTR4-TNT-insertion-11
Description: Tnk443-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Tnk443-LTR4-TNT-insertion-11
Tnk443-LTR4-TNT-insertion-11
[»] chr8 (1 HSPs)
chr8 (8-772)||(30841798-30842561)


Alignment Details
Target: chr8 (Bit Score: 677; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 8 - 772
Target Start/End: Original strand, 30841798 - 30842561
Alignment:
Q  8 atttggtgaatatgtgctttacttgagtgagtttgggtctcgtgattttagggtagaaattatcatgaattattattatatttttcagtatattcctttg 107  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30841798 atttggtgaatatgtgttttacttgagtgagtttgagtctcgtgattttagggtagaaattatcatgaattattat-atatttttcagtatattcctttg 30841896  T
Q  108 ctgtgtctgaaggcgttatcaacggtttattacacttcttctatatctatataattatgcttctctccagaaaacaaactcgagaaagcaaaattgaaat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30841897 ctgtgtctgaaggcgttatcaacggtttattacacttcttctatatctatataattatgcttctctccagaaaacaaactagagaaagcaaaattgaaat 30841996  T
Q  208 ccacttccaattctaaactaaactctgcataatcataatcatcttccaaaatccaaattctaacaacnnnnnnntggatttatcattaccgtcgtcgcca 307  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||       |||||||||||| |||||||||||||    
T  30841997 ccacttccaattctaaactaaactctgcataatcaaaatcatctttcaaaatccaaattctaacaacaaaaaaatggatttatcatcaccgtcgtcgcca 30842096  T
Q  308 tcattatcacgatcaacggaagatgcagtagaagaaataatgaaaactcacagatcattaccggcaaggccaagaacagaagaagttgaagcagccctaa 407  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30842097 tcattatcacgatcaacagaagatgcagtagaagaaataatgaaaactcacagatcattaccggcaaggccaagaacagaagaagttgaagcagccctaa 30842196  T
Q  408 cggtggttgaaaacgcagacaaagaagaattgtcgagactagaagtattttcttcatcatcatcgtctagaaaatccaaaggttcttcttccatgtcgga 507  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30842197 cggtggttgaaaacgcagacaaagaagaatcgtcgggactagaagtattttcttcatcatcatcgtctagaaaatccaaaggttcttcttccatgtcgga 30842296  T
Q  508 agagcttttaacaattttacaagagatacggaaaagtattgtgtctttcgaatgcaaagagaaaaagagagatgctcttaaactcttagaacacgaaaaa 607  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30842297 agagcttttaacaattttacaagagatgcggaaaagtattgtgtctttcgaatgcaaagagaaaaagagagatgctcttaaactcttagaactcgaaaaa 30842396  T
Q  608 gttcatgttctatttgatgatttcattctcaaagcttctaattgcatttcgagttctaataagtcccgtgatgctgcttcttcttcttcttccaagaatt 707  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30842397 gttcatgttctgtttgatgatttcattctcaaagcttctaattgcatttcgagttctaataagtcccgtgatgctgcttcttcttcttcttccaagaatt 30842496  T
Q  708 ttgtttcttcttcaaatttattcgataaagaaggtgtcgagattaangagaagaagggttcaaag 772  Q
    ||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30842497 ttgtttcttcttcgagtttattcgataaagaaggtgtcgagattaaggagaagaagggttcaaag 30842561  T

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