View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Tnk443-LTR4-TNT-insertion-12 (Length: 488)

Name: Tnk443-LTR4-TNT-insertion-12
Description: Tnk443-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Tnk443-LTR4-TNT-insertion-12
Tnk443-LTR4-TNT-insertion-12
[»] chr2 (1 HSPs)
chr2 (7-469)||(42960684-42961146)
[»] chr5 (1 HSPs)
chr5 (291-457)||(35607889-35608055)
[»] chr8 (3 HSPs)
chr8 (27-209)||(5503577-5503759)
chr8 (370-447)||(11791979-11792056)
chr8 (382-447)||(29858345-29858410)
[»] chr6 (4 HSPs)
chr6 (380-447)||(7712361-7712428)
chr6 (381-443)||(10890479-10890538)
chr6 (393-455)||(473905-473967)
chr6 (381-446)||(12117149-12117214)
[»] chr7 (2 HSPs)
chr7 (382-455)||(3182435-3182508)
chr7 (380-439)||(37702076-37702135)
[»] chr3 (2 HSPs)
chr3 (371-447)||(13873370-13873445)
chr3 (381-434)||(32783461-32783514)
[»] chr4 (1 HSPs)
chr4 (380-439)||(56081265-56081324)
[»] chr1 (1 HSPs)
chr1 (371-426)||(2443403-2443458)


Alignment Details
Target: chr2 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 7 - 469
Target Start/End: Complemental strand, 42961146 - 42960684
Alignment:
Q  7 aacagcataaggcaatactaggaaatgatagggagagtgaagtgattgtgtctagtggggcaattggaactcctcaaatgctattactcagtggaattgg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42961146 aacagcataaggcaatactaggaaatgatagggagagtgaagtgattgtgtctagtggggcaattggaactcctcaaatgctattactcagtggaattgg 42961047  T
Q  107 cccaaaagcagaacttgagaacttgaaaatccctgtggtacttgacaacagatttgttgggaagggtatggctgataatccaatgaacacaatttttgtt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42961046 cccaaaagcagaacttgagaacttgaaaatccctgtggtacttgacaacagatttgttgggaagggtatggctgataatccaatgaacacaatttttgtt 42960947  T
Q  207 cctcttaagaaatcagttaaacaatcattgatagaaacagttggtattaccaataagggtgtgtatattgaagctagctgtggatttggacagaccaatg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42960946 cctcttaagaaatcagttaaacaatcattgatagaaacagttggtattaccaataagggtgtgtatattgaagctagctgtggatttggacagaccaatg 42960847  T
Q  307 atagcattcattgccaccatggtttgctatcagctgaggtatgtcttcactcatcacctaatttgagttttgttattttgacacaaaaatttgtcattaa 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42960846 atagcattcattgccaccatggtttgctatcagctgaggtatgtcttcactcatcacctaatttgagttttgttattttgacacacaaatttgtcattaa 42960747  T
Q  407 atttcgacaacaaattagatggttaacatagttcaaatatgcggctaatcaagtttagtatat 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42960746 atttcgacaacaaattagatggttaacatagttcaaatatgcggctaatcaagtttagtatat 42960684  T

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Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 291 - 457
Target Start/End: Original strand, 35607889 - 35608055
Alignment:
Q  291 tttggacagaccaatgatagcattcattgccaccatggtttgctatcagctgaggtatgtcttcactcatcacctaatttgagttttgttattttgacac 390  Q
    ||||||||||||||||| |||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||| | | ||||| ||||    
T  35607889 tttggacagaccaatgacagcattcattgccaccatggtttgttgtcagctgagatatgtcttcactcatcacctaatttgagttgtttaattttcacac 35607988  T
Q  391 aaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatgcggctaatca 457  Q
    | ||| ||| ||||||||||| | |||||||||||||||||||||||||||||||||| | ||||||    
T  35607989 acaaaattgacattaaatttctagaacaaattagatggttaacatagttcaaatatgcagttaatca 35608055  T

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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 27 - 209
Target Start/End: Original strand, 5503577 - 5503759
Alignment:
Q  27 ggaaatgatagggagagtgaagtgattgtgtctagtggggcaattggaactcctcaaatgctattactcagtggaattggcccaaaagcagaacttgaga 126  Q
    |||||||||| | | |||||||||||  |||||||||||||||||||  |||||||||||||||| || ||||||||||| || ||||  |||||| |||    
T  5503577 ggaaatgatatgcaaagtgaagtgatattgtctagtggggcaattgggtctcctcaaatgctattgctaagtggaattggtcctaaagatgaacttcaga 5503676  T
Q  127 acttgaaaatccctgtggtacttgacaacagatttgttgggaagggtatggctgataatccaatgaacacaatttttgttcct 209  Q
    ||||||| ||| | ||||| ||| ||||    |||||||||||||| |||   |||||||| ||||||||| |||||||||||    
T  5503677 acttgaacatctcagtggtccttaacaatccttttgttgggaagggaatgatagataatcctatgaacacagtttttgttcct 5503759  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 447
Target Start/End: Original strand, 11791979 - 11792056
Alignment:
Q  370 tgagttttgttattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatg 447  Q
    |||||| ||| ||||||||| || |||||| ||| ||||||||||||||||||||| |||||||| | |||| |||||    
T  11791979 tgagttgtgtgattttgacataagaatttgacatcaaatttcgacaacaaattagacggttaacacaattcacatatg 11792056  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 382 - 447
Target Start/End: Original strand, 29858345 - 29858410
Alignment:
Q  382 ttttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatg 447  Q
    |||||| ||||||||||| ||| ||||||||||  ||| ||||| |||||||||| ||||||||||    
T  29858345 ttttgaaacaaaaatttgacatcaaatttcgacgtcaatttagaaggttaacataattcaaatatg 29858410  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 380 - 447
Target Start/End: Complemental strand, 7712428 - 7712361
Alignment:
Q  380 tattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatg 447  Q
    ||||||||||||  ||||||  |  ||||||||||||||  |||||||||||||||||||||||||||    
T  7712428 tattttgacacacgaatttgataacaaatttcgacaacagtttagatggttaacatagttcaaatatg 7712361  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 443
Target Start/End: Complemental strand, 10890538 - 10890479
Alignment:
Q  381 attttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaa 443  Q
    |||||||||||||  |||| |||||| ||||||||||||| ||||||||||||| ||||||||    
T  10890538 attttgacacaaa--tttgacattaa-tttcgacaacaaactagatggttaacagagttcaaa 10890479  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 455
Target Start/End: Complemental strand, 473967 - 473905
Alignment:
Q  393 aaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatgcggctaat 455  Q
    ||||||| ||| ||||||| || |||||||||||| ||||||||||| | ||||| |||||||    
T  473967 aaatttgacatgaaatttcaaccacaaattagatgattaacatagtttacatatgtggctaat 473905  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 446
Target Start/End: Complemental strand, 12117214 - 12117149
Alignment:
Q  381 attttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatat 446  Q
    ||||||||||| ||||||| ||| ||| ||| ||||||| ||| ||||||||  ||||||||||||    
T  12117214 attttgacacacaaatttgacatcaaacttcaacaacaatttatatggttaatgtagttcaaatat 12117149  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 382 - 455
Target Start/End: Original strand, 3182435 - 3182508
Alignment:
Q  382 ttttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatgcggctaat 455  Q
    |||||| ||||||||||| ||  ||||||||||||| | ||||||||||||  ||||| ||||||| |||||||    
T  3182435 ttttgatacaaaaatttgacaacaaatttcgacaactatttagatggttaaggtagttaaaatatgtggctaat 3182508  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 439
Target Start/End: Complemental strand, 37702135 - 37702076
Alignment:
Q  380 tattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagtt 439  Q
    |||||||| ||| ||||||||||| ||||||| |||||||||||||| ||| | ||||||    
T  37702135 tattttgaaacacaaatttgtcatcaaatttcaacaacaaattagatagttgatatagtt 37702076  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 447
Target Start/End: Original strand, 13873370 - 13873445
Alignment:
Q  371 gagttttgttattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatg 447  Q
    ||||| ||||| ||||||||||||||| | ||||||| |||||||| ||| || || |||||||||||| |||||||    
T  13873370 gagttgtgttactttgacacaaaaatt-gacattaaaattcgacaaaaaactaaattgttaacatagtttaaatatg 13873445  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 434
Target Start/End: Complemental strand, 32783514 - 32783461
Alignment:
Q  381 attttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaaca 434  Q
    ||||||||||| ||||||| | | ||||||| ||||||||||||| ||||||||    
T  32783514 attttgacacacaaatttgacttcaaatttcaacaacaaattagacggttaaca 32783461  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 439
Target Start/End: Complemental strand, 56081324 - 56081265
Alignment:
Q  380 tattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagtt 439  Q
    |||||||||||||||||||| ||| ||| || |||||||| ||||||| |||||| ||||    
T  56081324 tattttgacacaaaaatttgacataaaaatttgacaacaatttagatgattaacacagtt 56081265  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 426
Target Start/End: Original strand, 2443403 - 2443458
Alignment:
Q  371 gagttttgttattttgacacaaaaatttgtcattaaatttcgacaacaaattagat 426  Q
    ||||| |||||||||||||||||||||   ||| ||||||||||| ||||||||||    
T  2443403 gagttgtgttattttgacacaaaaattcaacatcaaatttcgacaccaaattagat 2443458  T

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