View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Tnk443-LTR4-TNT-insertion-2 (Length: 773)
Name: Tnk443-LTR4-TNT-insertion-2
Description: Tnk443-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk443-LTR4-TNT-insertion-2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 472; Significance: 0; HSPs: 15)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 9 - 570
Target Start/End: Original strand, 21489114 - 21489683
Alignment:
| Q |
9 |
acaagccgatggactcgtcttctttcttgcaccacaagacaccgtaattcctcacaactctgtgggttcaaaactcggagtagttgatgggaaaaaggct |
108 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21489114 |
acaagccgatggactcatcttctttcttgcaccacaagacaccgtaattcctcacaactctgtgggttcaaaactcggagtagttgatgggaaaaatgct |
21489213 |
T |
|
| Q |
109 |
ttcaatcaatttgttggtgtcgagtttgatagtcatgccaataagcaagtgtttgatcccaattatgcacatattggaattgatgttaactcagtaatat |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21489214 |
ttcaatcaatttgttggtgtcgagtttgatagtcatgccaataagttagtgtttgatcccaattatgcacatattggaattgatgttaactcagtaatat |
21489313 |
T |
|
| Q |
209 |
cctccagtacaacaccatggaacagggtgagtgggtcattggtgaaagtaagtataatctatgactctccctctaacacattgagtgttgttgccactaa |
308 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21489314 |
catccagtacaacaccatggaacagggtgagtgggtcattggtgaaagtaagtataatctatgactctccctctaacacattgagtgttgttgccactaa |
21489413 |
T |
|
| Q |
309 |
cagcaatggtcaaatttctactcttgctgatgttgttgatttgaaagctgttctcccaccgaacgttagggttggtttttctggaacagttacaactgtc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21489414 |
cagcaatggtcaaatttctactcttgctgatgttgttgatttgaaagctgttctcccaccgaacgttagggttggtttttctggaacagttacagctgtc |
21489513 |
T |
|
| Q |
409 |
ggccgccaattgcaacagattcattcatggtctttcacttcaatcttggcatgattggtctcctacgtacgttatgtatgcatgcata----gagattgt |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21489514 |
ggccgccaattgcaacagattcattcatggtctttcacttcaaccttggcatgattggtctcctacgtacgttatgtatgcatgcatgcatggagattgt |
21489613 |
T |
|
| Q |
505 |
gata----ataactagtatgcctaaacaatagacgatactagattgtgatagtaacttgtatggctaaac |
570 |
Q |
| |
|
|||| |||||||||||| |||||||| || | ||| |||||||||||| ||||| ||||| |||||| |
|
|
| T |
21489614 |
gatatataataactagtatggctaaacaaaagtccatattagattgtgataataactagtatgcctaaac |
21489683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 11 - 570
Target Start/End: Original strand, 21482777 - 21483330
Alignment:
| Q |
11 |
aagccgatggactcgtcttctttcttgcaccacaagacaccgtaattcctcacaactctgtgggttcaaaactcggagtagttgatgggaaaaaggcttt |
110 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||| ||||| ||||||| |||||||| |||||||| |||||||||||||||| | |||| ||||| |
|
|
| T |
21482777 |
aagccgatggagtcatcttctttcttgcaccacaagataccgtcattcctcccaactctggaggttcaaatctcggagtagttgatgcgcaaaatgcttt |
21482876 |
T |
|
| Q |
111 |
caatcaatttgttggtgtcgagtttgatagtcatgccaataagcaagtgtttgatcccaattatgcacatattggaattgatgttaactcagtaatatcc |
210 |
Q |
| |
|
|||||||||||||||||| |||||||| | |||||||| || | ||||||||| ||| ||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
21482877 |
caatcaatttgttggtgtagagtttgactcttatgccaatcagta------tgatcccaagtatccacatattggaattgatgttaactctgtaatttcc |
21482970 |
T |
|
| Q |
211 |
tccagtacaacaccatggaacagggtgagtgggtcattggtgaaagtaagtataatctatgactctccctctaacacattgagtgttgttgccactaaca |
310 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||| ||||||||||||||||||| ||||||| ||| |
|
|
| T |
21482971 |
tccaggacaacaccatggaacagggtgagtgggtcattagtcaaagtaagtataatttatgactctctatctaacacattgagtgttgctgccactgaca |
21483070 |
T |
|
| Q |
311 |
gcaatggtcaaatttctactcttgctgatgttgttgatttgaaagctgttctcccaccgaacgttagggttggtttttctggaacagttacaactgtcgg |
410 |
Q |
| |
|
||||||||||||||| ||| ||||| ||| |||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||| ||| ||| |
|
|
| T |
21483071 |
acaatggtcaaatttcaactgttgctcatgctgttgatttgaaagctgttctcccacagaacgttagggttggtttatctgcaacagttacatctggcgg |
21483170 |
T |
|
| Q |
411 |
ccgccaattgcaacagattcattcatggtctttcacttcaatcttggcatgattggtctcctacgtacgttatgtatgcatgcatagagattgtgataat |
510 |
Q |
| |
|
||||||||||||| | |||||||| |||||||||||||| | |||||||||||||| || | |||||||||||||||||||| |||||||||||||| |
|
|
| T |
21483171 |
ccgccaattgcaaaacattcattcgtggtctttcacttctaccttggcatgattggacttc----tacgttatgtatgcatgcatggagattgtgataat |
21483266 |
T |
|
| Q |
511 |
aactagtatg----cctaaacaatagacgatactagattgtgatagtaacttgtatggctaaac |
570 |
Q |
| |
|
|||||||||| |||||||| |||| |||||||||||||||| ||||| |||||||||||| |
|
|
| T |
21483267 |
aactagtatggctagctaaacaaaagaccatactagattgtgataataactagtatggctaaac |
21483330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 549
Target Start/End: Original strand, 21492930 - 21493463
Alignment:
| Q |
12 |
agccgatggactcgtcttctttcttgcaccacaagacaccgtaattcctcacaactctgtgggttcaaaactcggagtagttgatgggaaaaaggctttc |
111 |
Q |
| |
|
|||||||||| || |||||||||||||| |||| |||||||| ||||||| |||||||| ||| | | |||||||||||||||| | |||| |||||| |
|
|
| T |
21492930 |
agccgatggaatcatcttctttcttgcatcacatgacaccgtcattcctcccaactctggaggtaaatatctcggagtagttgatgtgcaaaatgctttc |
21493029 |
T |
|
| Q |
112 |
aatcaatttgttggtgtcgagtttgatagtcatgccaataagcaagtgtttgatcccaattatgcacatattggaattgatgttaactcagtaatatcct |
211 |
Q |
| |
|
||||||||||||||||| |||||||| | |||||||| || | ||||||||| ||| ||||||||||||||||||||||||| |||| ||| |
|
|
| T |
21493030 |
aatcaatttgttggtgtagagtttgactcttatgccaatcagta------tgatcccaagtatccacatattggaattgatgttaactctttaatttccc |
21493123 |
T |
|
| Q |
212 |
ccagtacaacaccatggaacagggtgagtgggtcattggtgaaagtaagtataatctatgactctccctctaacacattgagtgttgttgccactaacag |
311 |
Q |
| |
|
||| |||||| ||||||| | ||| ||||||||||| || ||||||| ||||||||||||| ||| |||||| ||||| |||| | ||||||||| |
|
|
| T |
21493124 |
gcaggacaacaacatggaataaggtaagtgggtcattagtcaaagtaaatataatctatgaccctctctctaaacaattgatggttgcttccactaacaa |
21493223 |
T |
|
| Q |
312 |
caatggtcaaatttctactcttgctgatgttgttgatttgaaagctgttctcccaccgaacgttagggttggtttttctggaacagttacaactgtcggc |
411 |
Q |
| |
|
|||||||| |||||||||| ||||| ||| ||||||||||||||||||||||||| || |||| ||||||||| |||| | || ||||| || |||| |
|
|
| T |
21493224 |
caatggtccaatttctactattgctcatgctgttgatttgaaagctgttctcccagaaaatgttaaggttggtttatctgcatcaattacatctaacggc |
21493323 |
T |
|
| Q |
412 |
cgccaattgcaacagattcattcatggtctttcacttcaatcttggcatgattggtctcctacgtacgttatgtatgcatgcatagagattgtg--ataa |
509 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||| | ||||||||||||||||| ||| ||||||||||||||||||||| || |||||| |||| |
|
|
| T |
21493324 |
cgccaaacgcaacacattcattcatggtctttcacttctaccttggcatgattggtcttctatgtacgttatgtatgcatgcatggaaattgtgatataa |
21493423 |
T |
|
| Q |
510 |
taactagtatgcctaaacaatagacgatactagattgtga |
549 |
Q |
| |
|
||||||||||| |||||||| || | |||||||||||||| |
|
|
| T |
21493424 |
taactagtatggctaaacaaaagtccatactagattgtga |
21493463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 498 - 773
Target Start/End: Original strand, 21489654 - 21489928
Alignment:
| Q |
498 |
agattgtgataataactagtatgcctaaacaatagacgatactagattgtgatagtaacttgtatggctaaactacctcaagnnnnnnnnnnnnnnnnnn |
597 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21489654 |
agattgtgataataactagtatgcctaaacaatagaccatactagattgtgatagtaacttgtatggctaaactccctcaagaaaagaaaaagaaaaaaa |
21489753 |
T |
|
| Q |
598 |
nnnctagtatggctaaactagattgtgataataaatagtatggctaaaccaaagaccatacttgaaccatgtatatgtttcaatttatctataaataaat |
697 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21489754 |
aa-ctagtatggctaaactagattgtgataataactggtatggctaaaccaaagaccatacttgaaccatgtatatgtttcaatttatctataaataaat |
21489852 |
T |
|
| Q |
698 |
ccatgcttaaactaatgttacctaaatagctaagtcatgaatctctatcatgacacaataactaataccctttccg |
773 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
21489853 |
ccatgcttaaactaatgttacctaaatagctaagtcatgaatctctatcatgcctcaataactaataccctttccg |
21489928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 618 - 739
Target Start/End: Original strand, 21483518 - 21483640
Alignment:
| Q |
618 |
gattgtgataataaatagtatggctaaaccaaagaccatacttgaaccatgtatatgtttcaatttatctataaataaa-tccatgcttaaactaatgtt |
716 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||| ||| |||||||||||| ||||||||||| |||||||| |
|
|
| T |
21483518 |
gattgtgataataactagtatggctaaacaaaagaccatacttgaatcatgtatatgtttcggtttttctataaataaagtccatgcttaacctaatgtt |
21483617 |
T |
|
| Q |
717 |
acctaaatagctaagtcatgaat |
739 |
Q |
| |
|
||||||||| | ||||||||||| |
|
|
| T |
21483618 |
acctaaataaccaagtcatgaat |
21483640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 620 - 746
Target Start/End: Original strand, 21493466 - 21493602
Alignment:
| Q |
620 |
ttgtgataataaatagtatggctaaaccaaagaccatacttgaaccat---gtatatgtttcaatttatctataaataaa-tccatgcttaaac------ |
709 |
Q |
| |
|
||||||| |||| ||||||||||||| ||||||||||||||||| | || ||||||||| |||||||||||||||| ||||||||||| | |
|
|
| T |
21493466 |
ttgtgatgataactagtatggctaaagaaaagaccatacttgaacaactacgtgtatgtttcagtttatctataaataaagtccatgcttaacctaatta |
21493565 |
T |
|
| Q |
710 |
taatgttacctaaatagctaagtcatgaatctctatc |
746 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21493566 |
taatgttacctaaataactaagtcatgaatctctatc |
21493602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 498 - 570
Target Start/End: Original strand, 21483301 - 21483373
Alignment:
| Q |
498 |
agattgtgataataactagtatgcctaaacaatagacgatactagattgtgatagtaacttgtatggctaaac |
570 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || | ||| |||||||||||| ||||| |||||||||||| |
|
|
| T |
21483301 |
agattgtgataataactagtatggctaaacaaaagtccatattagattgtgataataactagtatggctaaac |
21483373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 498 - 570
Target Start/End: Original strand, 21483344 - 21483416
Alignment:
| Q |
498 |
agattgtgataataactagtatgcctaaacaatagacgatactagattgtgatagtaacttgtatggctaaac |
570 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || | ||| |||||||||||| ||||| |||||||||||| |
|
|
| T |
21483344 |
agattgtgataataactagtatggctaaacaaaagtccatattagattgtgataataactagtatggctaaac |
21483416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 498 - 570
Target Start/End: Original strand, 21483387 - 21483459
Alignment:
| Q |
498 |
agattgtgataataactagtatgcctaaacaatagacgatactagattgtgatagtaacttgtatggctaaac |
570 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || | ||| |||||||||||| ||||| |||||||||||| |
|
|
| T |
21483387 |
agattgtgataataactagtatggctaaacaaaagtccatattagattgtgataataactagtatggctaaac |
21483459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 498 - 549
Target Start/End: Original strand, 21483430 - 21483481
Alignment:
| Q |
498 |
agattgtgataataactagtatgcctaaacaatagacgatactagattgtga |
549 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || | |||||||||||||| |
|
|
| T |
21483430 |
agattgtgataataactagtatggctaaacaaaagtccatactagattgtga |
21483481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 657
Target Start/End: Original strand, 21483298 - 21483341
Alignment:
| Q |
614 |
actagattgtgataataaatagtatggctaaaccaaagaccata |
657 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||| ||||| |
|
|
| T |
21483298 |
actagattgtgataataactagtatggctaaacaaaagtccata |
21483341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 659
Target Start/End: Original strand, 21483429 - 21483472
Alignment:
| Q |
616 |
tagattgtgataataaatagtatggctaaaccaaagaccatact |
659 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||| ||||||| |
|
|
| T |
21483429 |
tagattgtgataataactagtatggctaaacaaaagtccatact |
21483472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 616 - 657
Target Start/End: Original strand, 21483343 - 21483384
Alignment:
| Q |
616 |
tagattgtgataataaatagtatggctaaaccaaagaccata |
657 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||| ||||| |
|
|
| T |
21483343 |
tagattgtgataataactagtatggctaaacaaaagtccata |
21483384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 616 - 657
Target Start/End: Original strand, 21483386 - 21483427
Alignment:
| Q |
616 |
tagattgtgataataaatagtatggctaaaccaaagaccata |
657 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||| ||||| |
|
|
| T |
21483386 |
tagattgtgataataactagtatggctaaacaaaagtccata |
21483427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 499 - 540
Target Start/End: Original strand, 21483518 - 21483559
Alignment:
| Q |
499 |
gattgtgataataactagtatgcctaaacaatagacgatact |
540 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||| ||||| |
|
|
| T |
21483518 |
gattgtgataataactagtatggctaaacaaaagaccatact |
21483559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 254 - 301
Target Start/End: Original strand, 41037985 - 41038032
Alignment:
| Q |
254 |
aagtaagtataatctatgactctccctctaacacattgagtgttgttg |
301 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41037985 |
aagtaagtatagcctatgactctccctctaacacattgagtgttgttg |
41038032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 268 - 365
Target Start/End: Original strand, 41066183 - 41066280
Alignment:
| Q |
268 |
tatgactctccctctaacacattgagtgttgttgccactaacagcaatggtcaaatttctactcttgctgatgttgttgatttgaaagctgttctccc |
365 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||| | |||||| || ||||||| ||||| | | ||||||||||||||||| ||||| |
|
|
| T |
41066183 |
tatgactcttcctctaacacattgagtgttgttgtcacttatgccaatggaaaattttctaccattgctcaaatcgttgatttgaaagctgtgctccc |
41066280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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