View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Tnk443-LTR4-TNT-insertion-6 (Length: 102)
Name: Tnk443-LTR4-TNT-insertion-6
Description: Tnk443-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk443-LTR4-TNT-insertion-6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 80; Significance: 4e-38; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 4e-38
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 10999890 - 10999977
Alignment:
| Q |
8 |
tattcttctgcagctttacatggccaggaaatcccaatcgtcattatattgaagtttataagcaaaaacgagatatttgtcacaattg |
95 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10999890 |
tattcttctgcagctttacatggtcaggaaatcctaatcgtcattatattgaagtttataagcaaaaacgagatatttgtcacaattg |
10999977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 6e-25
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 10973488 - 10973561
Alignment:
| Q |
8 |
tattcttctgcagctttacatggccaggaaatcccaatcgtcattatattgaagtttataagcaaaaacgagat |
81 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10973488 |
tattcttttgcagctttacgtggccaggaaatcccgatcgtcattatattgaagtttataagcaaagacgagat |
10973561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 11041207 - 11041134
Alignment:
| Q |
8 |
tattcttctgcagctttacatggccaggaaatcccaatcgtcattatattgaagtttataagcaaaaacgagat |
81 |
Q |
| |
|
||||||||||||| |||||||||| ||||| ||| ||||||||||||||||| |||| | |||||||||||| |
|
|
| T |
11041207 |
tattcttctgcagttttacatggcaaggaagtccatatcgtcattatattgaaatttacagtcaaaaacgagat |
11041134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 7846792 - 7846865
Alignment:
| Q |
8 |
tattcttctgcagctttacatggccaggaaatcccaatcgtcattatattgaagtttataagcaaaaacgagat |
81 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| ||| |||||||||||||||| |||| | |||||||||||| |
|
|
| T |
7846792 |
tatttttctgcagctttacatggcaaggaagtccatatcgtcattatattgatatttacagtcaaaaacgagat |
7846865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 11059632 - 11059705
Alignment:
| Q |
8 |
tattcttctgcagctttacatggccaggaaatcccaatcgtcattatattgaagtttataagcaaaaacgagat |
81 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| ||| |||||||||||||||| |||| | |||||||||||| |
|
|
| T |
11059632 |
tatttttctgcagctttacatggcaaggaagtccatatcgtcattatattgatatttacagtcaaaaacgagat |
11059705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 11073307 - 11073380
Alignment:
| Q |
8 |
tattcttctgcagctttacatggccaggaaatcccaatcgtcattatattgaagtttataagcaaaaacgagat |
81 |
Q |
| |
|
|||| ||||||||||||||||||| |||| ||| |||||||||||||||| |||| | |||||||||||| |
|
|
| T |
11073307 |
tatttttctgcagctttacatggcagggaagtccatatcgtcattatattgatatttacagtcaaaaacgagat |
11073380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University