View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Tnk443-LTR4-TNT-insertion-7 (Length: 276)
Name: Tnk443-LTR4-TNT-insertion-7
Description: Tnk443-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk443-LTR4-TNT-insertion-7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 36 - 202
Target Start/End: Complemental strand, 13070212 - 13070046
Alignment:
| Q |
36 |
ctatatggaaaaccactaaaaacatcaaacaaggtacatgtttattcctatatcaaattagatagaaaaattaattaatggtgttggcctgaactcttca |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13070212 |
ctatatggaaaaccactaaaaacatcaaacaaggtacatgtttattcctatatcaaattagatagaaaaattaattaatggtgttggcctgaactcttca |
13070113 |
T |
|
| Q |
136 |
ccacagtaacgggacaagaagcattattcactacgtaattgctgacactgcccattatcgccctgag |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13070112 |
ccacagtaacgggacaagaagcattattcactacgtaattgctgacactgcccattatcgccctgag |
13070046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University