View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk444-LTR4-TNT-insertion-1 (Length: 310)
Name: Tnk444-LTR4-TNT-insertion-1
Description: Tnk444-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk444-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 9 - 301
Target Start/End: Original strand, 3705406 - 3705698
Alignment:
| Q |
9 |
agtaccctatagcccaagaagtgtacccttttaaactgatcacttcatatgcgccgtttataacctccttatgtatgttctctagcatttctttctcata |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3705406 |
agtaccctatagcccaagaagtgtacccttttaaactgatcacttcatatgcgccgtttataacctccttatgtatgttctctagcatttctttctcata |
3705505 |
T |
|
| Q |
109 |
agctatttgttgtttctccaaaaagcttagcactggaacacctccgacactaatgcttgaccataatgccactgaactgtcaccatgttcccccactatg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3705506 |
agctatttgttgtttctccaaaaagcttagcactggaacacctccgacactaatgcttgaccataatgccactgaactatcaccatgttcccccactatg |
3705605 |
T |
|
| Q |
209 |
tatgcctacaatatcaacttacactgataaaatattgagtttactatttgttgatcgtgaccagtgttagttctaaattgcgttctgcaattg |
301 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3705606 |
tatgcctacaatatcaacttaaactgataaaatattgagtttactatttgttgatcgtgaccagtgttagttctaaattgcattctgcaattg |
3705698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 215
Target Start/End: Complemental strand, 41766693 - 41766487
Alignment:
| Q |
9 |
agtaccctatagcccaagaagtgtacccttttaaactgatcacttcatatgcgccgtttataacctccttatgtatgttctctagcatttctttctcata |
108 |
Q |
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||||||| || ||||| |||||||| ||||||| |||||| |||||||| |||| |||||| || ||| ||||| ||||| || ||||||||||||| |
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| T |
41766693 |
agtacccaatggcccatgaagtgtagccttttagactgatgacttcataagcgctgtttatcacagtcttgtgtatattctccagtgtttctttctcata |
41766594 |
T |
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| Q |
109 |
agctatttgttgtttctccaaaaagcttagcactggaacacctccgacactaatgcttgaccataatgccactgaactgtcaccatgttcccccactatg |
208 |
Q |
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|| || ||||||||||||||||| || ||||| |||| ||| || | || || || ||||| ||||| |||||||| || ||||| ||||| |||||| |
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| T |
41766593 |
tgcaatctgttgtttctccaaaaaactcagcacgggaataccaccaatgctgatactagaccacaatgctactgaactatccccatgctcccctactatg |
41766494 |
T |
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| Q |
209 |
tatgcct |
215 |
Q |
| |
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|||||| |
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|
| T |
41766493 |
catgcct |
41766487 |
T |
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